tableControl: Output table/data.frame options

In nlmixr: Nonlinear Mixed Effects Models in Population PK/PD

Output table/data.frame options

Description

Output table/data.frame options

Usage

tableControl(
  npde = NULL,
  cwres = NULL,
  nsim = 300,
  ties = TRUE,
  censMethod = c("truncated-normal", "cdf", "ipred", "pred", "epred", "omit"),
  seed = 1009,
  cholSEtol = (.Machine$double.eps)^(1/3),
  state = TRUE,
  lhs = TRUE,
  eta = TRUE,
  covariates = TRUE,
  addDosing = FALSE,
  subsetNonmem = TRUE,
  cores = NULL
)

Arguments

npde	When TRUE, request npde regardless of the algorithm used.
cwres	When TRUE, request CWRES and FOCEi likelihood regardless of the algorithm used.
nsim	represents the number of simulations. For RxODE, if you supply single subject event tables (created with [eventTable()])
ties	When 'TRUE' jitter prediction-discrepancy points to discourage ties in cdf.
censMethod	Handle censoring method: - '"truncated-normal"' Simulates from a truncated normal distribution under the assumption of the model and censoring. - '"cdf"' Use the cdf-method for censoring with npde and use this for any other residuals ('cwres' etc) - '"omit"' omit the residuals for censoring
seed	an object specifying if and how the random number generator should be initialized
cholSEtol	The tolerance for the 'RxODE::choleSE' function
state	is a Boolean indicating if 'state' values will be included (default 'TRUE')
lhs	is a Boolean indicating if remaining 'lhs' values will be included (default 'TRUE')
eta	is a Boolean indicating if 'eta' values will be included (default 'TRUE')
covariates	is a Boolean indicating if covariates will be included (default 'TRUE')
addDosing	Boolean indicating if the solve should add RxODE EVID and related columns. This will also include dosing information and estimates at the doses. Be default, RxODE only includes estimates at the observations. (default FALSE). When addDosing is NULL, only include EVID=0 on solve and exclude any model-times or EVID=2. If addDosing is NA the classic RxODE EVID events are returned. When addDosing is TRUE add the event information in NONMEM-style format; If subsetNonmem=FALSE RxODE will also include extra event types (EVID) for ending infusion and modeled times: EVID=-1 when the modeled rate infusions are turned off (matches rate=-1) EVID=-2 When the modeled duration infusions are turned off (matches rate=-2) EVID=-10 When the specified rate infusions are turned off (matches rate>0) EVID=-20 When the specified dur infusions are turned off (matches dur>0) EVID=101,102,103,... Modeled time where 101 is the first model time, 102 is the second etc.
subsetNonmem	subset to NONMEM compatible EVIDs only. By default TRUE.
cores	Number of cores used in parallel ODE solving. This is equivalent to calling setRxThreads()

Details

If you ever want to add CWRES/FOCEi objective function you can use the addCwres

If you ever want to add NPDE/EPRED columns you can use the addNpde

Value

A list of table options for nlmixr

Author(s)

Matthew L. Fidler

nlmixr documentation built on March 27, 2022, 5:05 p.m.