basic.eta.GOF: Histogram and/or QQ-norm GOF for ETA's

In nonmem2R: Loading NONMEM Output Files with Functions for Visual Predictive Checks (VPC) and Goodness of Fit (GOF) Plots

Histogram and/or QQ-norm GOF for ETA's

Description

Provides histogram and/or QQ-norm GOF for all ETA's included in the input data.frame with caption added as reurned by get.caption

Usage

basic.eta.GOF(data, title = "", global.ggplot.options = NULL,
  type = c("both", "qqnorm", "hist"), ETA.subset = NULL,
  refline = TRUE, drop.fixed = TRUE, id.column = "ID",
  standardize = TRUE, bins = NA, control = GOF.control())

eta.hist.GOF(data, title = "", drop.fixed = TRUE, refline = TRUE,
  id.column = "ID", standardize = TRUE, bins = NA,
  control = GOF.control())

eta.qqnorm.GOF(data, title = "", drop.fixed = TRUE, refline = TRUE,
  id.column = "ID", standardize = TRUE, control = GOF.control())

Arguments

data	data.frame to plot
title	title
global.ggplot.options	ggplot option added to each ggplot before plotting/returning object
type	do only qq-norm plots (qqnorm), only histograms (hist), or do both (both)
ETA.subset	index for subset of ETA's to plot. If NULL (default) all ETA's are plotted.
refline	add reference line (default =TRUE) or not (FALSE)
drop.fixed	drop ETA's that are fixed, i.e. any ETA with the same value in all subjects
id.column	column name that indicate subject identifier
standardize	Standardize all ETA's (e.g. scale to unit variance)
bins	number of histogram bins, if NA, bins are set using Sturges' formula
control	an optional list of control settings. See GOF.control for the names of the settable control values and their effect.

Examples

# Get path to the example files included in nonmem2R package
file1 <- system.file("extdata", "sdtab999", package = "nonmem2R")
sdtab<-read.table(file=file1,skip=1,header=TRUE)
set.script.name("MyScript.R")
basic.eta.GOF(sdtab)

nonmem2R documentation built on April 15, 2022, 1:05 a.m.