extToTable: Compile parameter table suitable for reports

In nonmem2R: Loading NONMEM Output Files with Functions for Visual Predictive Checks (VPC) and Goodness of Fit (GOF) Plots

Compile parameter table suitable for reports

Description

Load parameter values from a nonmem .ext output file and compile to table suitable for reports. Format can be "wide" (wide=TRUE, default) with a similar look as from sumoR, or similar a 3 column layout (wide=FALSE).

Usage

extToTable(model, use.model.path = TRUE, tableType = 2, wide = TRUE,
  format.estimate = "% -#6.4g", format.rse = "%#6.3g")

Arguments

model	name of the ext file with or without the .ext extension. model may include full or relative path to the ext file. See examples.
use.model.path	Load file from a global defined model library (TRUE=default). If so will look for a global character vector named model.path
tableType	Table type for THETA's, OMEGA's and SIGMA's tableType=0: Present OMEGA and SIGMA as variance and covariances and display SE for THETA, OMEGA, SIGMA tableType=1: Present OMEGA and SIGMA as variance and covariances and display RSE for THETA, OMEGA, SIGMA tableType=2: Present OMEGA and SIGMA as standard-deviation and correlations and display RSE for THETA, OMEGA, SIGMA tableType=3: Present OMEGA and SIGMA as standard-deviation and correlations and display SE for THETA, OMEGA, SIGMA
wide	produce a wide 9-column table (wide=TRUE, default) or a thin 3-column table(wide=FALSE)
format.estimate	format for estimated value, passed to sprintf
format.rse	format for rse, passed to sprintf

Value

a character-matrix

Examples

##### Load the .ext file "run001.ext"
# 1) Get path to the example file included in nonmem2R package
file1 <- system.file("extdata", "run001.ext", package = "nonmem2R")
# 2) Load the file using the extload function
extToTable(file1)

nonmem2R documentation built on April 15, 2022, 1:05 a.m.