eta.cov.GOF | R Documentation |
ETA's vs numerical covariates (eta.cov.GOF) and ETA's vs categorical covariates GOF plots on multiple or single pages with reflines, data smoother, and caption added as reurned by get.caption.
eta.pairs.GOF provides a pairs plot of all ETA's.
eta.cov.GOF(data, covariates = c("AGE", "BWT"), ETA.subset = NULL, exclude.zero.ETA = FALSE, title = "", drop.fixed = TRUE, id.column = "ID", standardize = TRUE, refline = TRUE, type = c("all-in-one", "covariate-by-page", "eta-by-page"), layout = c("ETAbyROW", "ETAbyCOL"), add.loess = TRUE, control = GOF.control()) eta.cat.GOF(data, covariates = c("SEXM"), ETA.subset = NULL, exclude.zero.ETA = FALSE, title = "", drop.fixed = TRUE, id.column = "ID", standardize = TRUE, refline = TRUE, type = c("all-in-one", "covariate-by-page", "eta-by-page"), layout = c("ETAbyROW", "ETAbyCOL"), add.points = TRUE, control = GOF.control()) eta.pairs.GOF(data, ETA.subset = NULL, title = "", drop.fixed = TRUE, id.column = "ID", density2D = c("none", "upper", "lower"), standardize = TRUE, control = GOF.control())
data |
data.frame to plot |
covariates |
covariates, list of character strings |
ETA.subset |
index for subset of ETA's to plot. If NULL (default) all ETA's are plotted. |
exclude.zero.ETA |
If set to TRUE any ETA==0 is excluded before plotting. This option is useful if the model have full shrinkage for subset of individuals e.g. for ETA on ED50 in patents on placebo or on dose==0. |
title |
title |
drop.fixed |
drop ETA's that are fixed, i.e. any ETA with the same value in all subjects |
id.column |
column name that indicate subject identifier |
standardize |
Standardize all ETA's (e.g. scale to unit variance) |
refline |
add reference line (default =TRUE) or not (FALSE) |
type |
do all ETA's and covariates on one page (all-in-one), one page for each covariate (covariate-by-page), or one page for each ETA (eta-by-page) |
layout |
Layout for ETA's and covariates |
add.loess |
add loess smoother to plot (TRUE), or not (FALSE) |
control |
an optional list of control settings. See GOF.control for the names of the settable control values and their effect. |
add.points |
add jittered points of data (TRUE), or not (FALSE) |
density2D |
add 2D-density above (upper) or below (lower), or don't add (none) |
# Get path to the example files included in nonmem2R package file1 <- system.file("extdata", "sdtab999", package = "nonmem2R") sdtab<-read.table(file=file1,skip=1,header=TRUE) set.script.name("MyScript.R") eta.cov.GOF(sdtab,covariates=c("AGE","BWT")) # Get path to the example files included in nonmem2R package file1 <- system.file("extdata", "sdtab999", package = "nonmem2R") sdtab<-read.table(file=file1,skip=1,header=TRUE) set.script.name("MyScript.R") eta.cat.GOF(sdtab,covariates=c("SEXM")) # Get path to the example files included in nonmem2R package file1 <- system.file("extdata", "sdtab999", package = "nonmem2R") sdtab<-read.table(file=file1,skip=1,header=TRUE) set.script.name("MyScript.R") eta.pairs.GOF(sdtab)
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