API for o2geosocial
Reconstruction of Transmission Chains from Surveillance Data
| Global functions | |
|---|---|
| .onAttach | Source code |
| add_convolutions | Source code |
| bind_moves | Source code |
| convolve_log | Source code |
| cpp_are_possible_ancestors | Source code |
| cpp_find_all_descendents | Source code |
| cpp_find_all_tree | Source code |
| cpp_find_descendents | Source code |
| cpp_find_local_cases | Source code |
| cpp_gen_tree | Source code |
| cpp_ll_age | Source code |
| cpp_ll_all | Source code |
| cpp_ll_reporting | Source code |
| cpp_ll_space | Source code |
| cpp_ll_timing | Source code |
| cpp_ll_timing_infections | Source code |
| cpp_ll_timing_sampling | Source code |
| cpp_log_like | Source code |
| cpp_log_like_s | Source code |
| cpp_move_a | Source code |
| cpp_move_alpha | Source code |
| cpp_move_ancestors | Source code |
| cpp_move_b | Source code |
| cpp_move_kappa | Source code |
| cpp_move_pi | Source code |
| cpp_move_swap_cases | Source code |
| cpp_move_t_inf | Source code |
| cpp_prior_a | Source code |
| cpp_prior_all | Source code |
| cpp_prior_b | Source code |
| cpp_prior_pi | Source code |
| cpp_swap_cases | Source code |
| create_config | Man page |
| create_param | Man page Source code |
| custom_likelihoods | Man page Source code |
| custom_moves | Man page Source code |
| custom_priors | Man page Source code |
| log_sum | Source code |
| log_sum_vec | Source code |
| outbreaker | Man page Source code |
| outbreaker_chains | Man page |
| outbreaker_data | Man page Source code |
| outbreaker_find_imports | Source code |
| outbreaker_init_mcmc | Source code |
| outbreaker_mcmc_shape | Source code |
| outbreaker_mcmc_store | Source code |
| outbreaker_move | Source code |
| outbreaker_param | Man page |
| outbreaker_store | Man page |
| plot.outbreaker_chains | Man page Source code |
| plot_importations | Source code |
| pre_clustering | Man page Source code |
| print.custom_likelihoods | Man page Source code |
| print.custom_priors | Man page Source code |
| print.outbreaker_chains | Man page Source code |
| summary.outbreaker_chains | Man page Source code |
| toy_outbreak_long | Man page |
| toy_outbreak_short | Man page |
