oceanmap: A Plotting Toolbox for 2D Oceanographic Data

Plotting toolbox for 2D oceanographic data (satellite data, sst, chla, ocean fronts & bathymetry). Recognized classes and formats include ncdf4, Raster, '.nc' and '.gz' files.

AuthorRobert K. Bauer
Date of publication2016-09-16 12:50:28
MaintainerRobert K. Bauer <robert.bauer@ird.fr>
LicenseGPL (>= 3)
Version0.0.2

View on CRAN

Man pages

add.region: adding a region to the region_definitions file

area_extrac: Extracts a pre-defined region from ".gz"-file and saves...

bindate2Title: returns formatted date string for v-plot titles

check_gzfiles: Returns summary on ".gz"-file types

check_ts: checks if daily ".gz"-file time series is complete

clim_plot: plots ".gz"-file climatologies

close_fig: function to close current graphic device

cmap: color maps

cust.colorbar: defines colorbar settings for 'v.raster' and...

delete.region: deletes a region from the region_definitions-definition file

digits: returns recognized number of digits for colorbar ticklabels

empty.plot: Creates an empty scatter plot

figure: generate (and save) graphic devices with flexible fileformat...

get.bathy: Returns bathymetric data from the NOAA ETOPO1 database as...

get.cb.pos: Returns additional colorbar placement information

internal.datasets: internal datasets

matrix2raster: Converts a matrix to a RasterLayer or arrays to a...

name_join: create "'.gz"-filenames from a list or dataframe

name_split: Returns a summary data frame of ".gz" encoded oceanography...

nc2raster: Convert Raster layer to a matrix or array

nc2time: reads and converts the time variable of a netcdf-file...

oceanmap: oceanmap - plot tools for 2D oceanographic data

param_convert: converts byte data to absolte values or vise versa...

parameter_definitions: parameter definitions dataframe

plotmap: plots landmask of a defined region

raster2matrix: Convert Raster layer to a matrix or array

readbin: Returns ".gz"-file as matrix or raster-object

region2SpatialPolygon: creates polygon from raster extent

region_definitions: region definitions dataframe

regions: Returns two-row summary table of a specified region.

set.colorbar: Adds colorbar to an extisting plot device

v: Ploting 2D oceanographic data

v-classes: v-classes

worldmap: World Map

writebin: Saves geographic data as byte file (".gz")

Functions

add.region Man page
area_extrac Man page
bathy-class Man page
bindate2main Man page
bindate2Title Man page
bindate2ylab Man page
check_gzfiles Man page
check_ts Man page
clim_plot Man page
close_fig Man page
cmap Man page
cmap_topo Man page
cust.colorbar Man page
delete.region Man page
digits Man page
empty.plot Man page
extent2SpatialPolygon Man page
figure Man page
get.bathy Man page
get.cb.pos Man page
get.gz.info Man page
.get.worldmap Man page
gz-class Man page
matrix2raster Man page
medm9_proj Man page
name_join Man page
name_split Man page
nc2raster Man page
nc2time Man page
nc-class Man page
ncdf4-class Man page
oceanmap Man page
param_convert Man page
parameter_definitions Man page
param_unconvert Man page
plotmap Man page
raster2array Man page
raster2matrix Man page
readbin Man page
region2SpatialPolygon Man page
region_definitions Man page
region_definitions.bkp Man page
regions Man page
regions.dim.bathy Man page
set.colorbar Man page
set.colorbarp Man page
v Man page
v.bathy Man page
v,bathy-method Man page
v,character-method Man page
v.gz Man page
v,gz-method Man page
v,ncdf4-method Man page
v,nc-method Man page
v.plot Man page
v.raster Man page
v,RasterBrick-method Man page
v,RasterLayer-method Man page
v,RasterStack-method Man page
writebin Man page

Files

oceanmap
oceanmap/inst
oceanmap/inst/doc
oceanmap/inst/doc/oceanmap.pdf
oceanmap/inst/test_files
oceanmap/inst/test_files/med4_avhrr_p100_4km_1m_20030601_20030630.smoothgrad.0.04-3-5.edge.gz
oceanmap/inst/test_files/med4_modis_chla_4km_1s_20030601_20120831.smoothgrad.0.01-3-5.gz
oceanmap/inst/test_files/medw4_modis_sst2_4km_1d_20020707_20020707.r2010.0.qual0.gz
oceanmap/inst/test_files/med4_modis_chla_4km_1s_20030901_20121130.smoothgrad.0.01-3-5.gz
oceanmap/inst/test_files/herring_lavae.nc
oceanmap/inst/test_files/copyrights
oceanmap/inst/test_files/med4_modis_chla_4km_1s_20030301_20120531.smoothgrad.0.01-3-5.gz
oceanmap/inst/test_files/med4_modis_chlagrad_4km_1d_20020720_20020720.R2012.0.gauss3.sobel3.gz
oceanmap/inst/test_files/med4_avhrr_sst2_4km_1m_20000801_20090831.smoothgrad.0.04-3-5.edge.gz
oceanmap/inst/test_files/med4_modis_chla_4km_1s_20030228_20121201.smoothgrad.0.01-3-5.gz
oceanmap/inst/test_files/medw4_modis_sst2_4km_1d_20020704_20020704.r2010.0.qual0.gz
oceanmap/inst/test_files/medw4_modis_sst2_4km_1d_20020705_20020705.r2010.0.qual0.gz
oceanmap/inst/test_files/topo.v02.nc
oceanmap/NAMESPACE
oceanmap/data
oceanmap/data/region_definitions.bkp_old.rda
oceanmap/data/cmap.rda
oceanmap/data/region_definitions.bkp.rda
oceanmap/data/parameter_definitions.rda
oceanmap/data/datalist
oceanmap/data/cmap_topo.rda
oceanmap/data/region_definitions.rda
oceanmap/R
oceanmap/R/check.folder.r
oceanmap/R/v.raster.r
oceanmap/R/writebin.r
oceanmap/R/raster2matrix.r
oceanmap/R/area_extrac.r
oceanmap/R/get.cb.pos.r
oceanmap/R/bindate2main.r
oceanmap/R/check_ts.r
oceanmap/R/get.bathy.r
oceanmap/R/param_unconvert.r
oceanmap/R/get.grid.res.r
oceanmap/R/bindate2Title.r
oceanmap/R/name_join.r
oceanmap/R/plotmap.r
oceanmap/R/cust.colorbar.r
oceanmap/R/sysdata.rda
oceanmap/R/check_gzfiles.r
oceanmap/R/readbin.r
oceanmap/R/nc2time.r
oceanmap/R/bindate2ylab.r
oceanmap/R/region2SpatialPolygon.r
oceanmap/R/get.worldmap.r
oceanmap/R/name_split.r
oceanmap/R/param_convert.r
oceanmap/R/add.region.r
oceanmap/R/delete.region.r
oceanmap/R/figure.r
oceanmap/R/set.colorbarp.r
oceanmap/R/regions.r
oceanmap/R/nc2raster.r
oceanmap/R/v.gz.r
oceanmap/R/matrix2raster.r
oceanmap/R/v.r
oceanmap/R/set.colorbar.r
oceanmap/R/digits.r
oceanmap/R/v.plot.r
oceanmap/R/clim_plot.r
oceanmap/R/empty.plot.r
oceanmap/MD5
oceanmap/DESCRIPTION
oceanmap/ChangeLog
oceanmap/man
oceanmap/man/regions.Rd oceanmap/man/name_split.Rd oceanmap/man/clim_plot.Rd oceanmap/man/parameter_definitions.Rd oceanmap/man/check_ts.Rd oceanmap/man/close_fig.Rd oceanmap/man/set.colorbar.Rd oceanmap/man/region_definitions.Rd oceanmap/man/nc2raster.Rd oceanmap/man/get.cb.pos.Rd oceanmap/man/oceanmap.Rd oceanmap/man/empty.plot.Rd oceanmap/man/matrix2raster.Rd oceanmap/man/v.Rd oceanmap/man/bindate2Title.Rd oceanmap/man/v-classes.Rd oceanmap/man/cust.colorbar.Rd oceanmap/man/param_convert.Rd oceanmap/man/check_gzfiles.Rd oceanmap/man/worldmap.Rd oceanmap/man/delete.region.Rd oceanmap/man/readbin.Rd oceanmap/man/writebin.Rd oceanmap/man/digits.Rd oceanmap/man/add.region.Rd oceanmap/man/plotmap.Rd oceanmap/man/area_extrac.Rd oceanmap/man/nc2time.Rd oceanmap/man/cmap.Rd oceanmap/man/figure.Rd oceanmap/man/region2SpatialPolygon.Rd oceanmap/man/get.bathy.Rd oceanmap/man/internal.datasets.Rd oceanmap/man/name_join.Rd oceanmap/man/raster2matrix.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.