oceanmap: A Plotting Toolbox for 2D Oceanographic Data

Plotting toolbox for 2D oceanographic data (satellite data, sst, chla, ocean fronts & bathymetry). Recognized classes and formats include ncdf4, Raster, '.nc' and '.gz' files.

Author
Robert K. Bauer
Date of publication
2016-09-16 12:50:28
Maintainer
Robert K. Bauer <robert.bauer@ird.fr>
License
GPL (>= 3)
Version
0.0.2

View on CRAN

Man pages

add.region
adding a region to the region_definitions file
area_extrac
Extracts a pre-defined region from ".gz"-file and saves...
bindate2Title
returns formatted date string for v-plot titles
check_gzfiles
Returns summary on ".gz"-file types
check_ts
checks if daily ".gz"-file time series is complete
clim_plot
plots ".gz"-file climatologies
close_fig
function to close current graphic device
cmap
color maps
cust.colorbar
defines colorbar settings for 'v.raster' and...
delete.region
deletes a region from the region_definitions-definition file
digits
returns recognized number of digits for colorbar ticklabels
empty.plot
Creates an empty scatter plot
figure
generate (and save) graphic devices with flexible fileformat...
get.bathy
Returns bathymetric data from the NOAA ETOPO1 database as...
get.cb.pos
Returns additional colorbar placement information
internal.datasets
internal datasets
matrix2raster
Converts a matrix to a RasterLayer or arrays to a...
name_join
create "'.gz"-filenames from a list or dataframe
name_split
Returns a summary data frame of ".gz" encoded oceanography...
nc2raster
Convert Raster layer to a matrix or array
nc2time
reads and converts the time variable of a netcdf-file...
oceanmap
oceanmap - plot tools for 2D oceanographic data
param_convert
converts byte data to absolte values or vise versa...
parameter_definitions
parameter definitions dataframe
plotmap
plots landmask of a defined region
raster2matrix
Convert Raster layer to a matrix or array
readbin
Returns ".gz"-file as matrix or raster-object
region2SpatialPolygon
creates polygon from raster extent
region_definitions
region definitions dataframe
regions
Returns two-row summary table of a specified region.
set.colorbar
Adds colorbar to an extisting plot device
v
Ploting 2D oceanographic data
v-classes
v-classes
worldmap
World Map
writebin
Saves geographic data as byte file (".gz")

Files in this package

oceanmap
oceanmap/inst
oceanmap/inst/doc
oceanmap/inst/doc/oceanmap.pdf
oceanmap/inst/test_files
oceanmap/inst/test_files/med4_avhrr_p100_4km_1m_20030601_20030630.smoothgrad.0.04-3-5.edge.gz
oceanmap/inst/test_files/med4_modis_chla_4km_1s_20030601_20120831.smoothgrad.0.01-3-5.gz
oceanmap/inst/test_files/medw4_modis_sst2_4km_1d_20020707_20020707.r2010.0.qual0.gz
oceanmap/inst/test_files/med4_modis_chla_4km_1s_20030901_20121130.smoothgrad.0.01-3-5.gz
oceanmap/inst/test_files/herring_lavae.nc
oceanmap/inst/test_files/copyrights
oceanmap/inst/test_files/med4_modis_chla_4km_1s_20030301_20120531.smoothgrad.0.01-3-5.gz
oceanmap/inst/test_files/med4_modis_chlagrad_4km_1d_20020720_20020720.R2012.0.gauss3.sobel3.gz
oceanmap/inst/test_files/med4_avhrr_sst2_4km_1m_20000801_20090831.smoothgrad.0.04-3-5.edge.gz
oceanmap/inst/test_files/med4_modis_chla_4km_1s_20030228_20121201.smoothgrad.0.01-3-5.gz
oceanmap/inst/test_files/medw4_modis_sst2_4km_1d_20020704_20020704.r2010.0.qual0.gz
oceanmap/inst/test_files/medw4_modis_sst2_4km_1d_20020705_20020705.r2010.0.qual0.gz
oceanmap/inst/test_files/topo.v02.nc
oceanmap/NAMESPACE
oceanmap/data
oceanmap/data/region_definitions.bkp_old.rda
oceanmap/data/cmap.rda
oceanmap/data/region_definitions.bkp.rda
oceanmap/data/parameter_definitions.rda
oceanmap/data/datalist
oceanmap/data/cmap_topo.rda
oceanmap/data/region_definitions.rda
oceanmap/R
oceanmap/R/check.folder.r
oceanmap/R/v.raster.r
oceanmap/R/writebin.r
oceanmap/R/raster2matrix.r
oceanmap/R/area_extrac.r
oceanmap/R/get.cb.pos.r
oceanmap/R/bindate2main.r
oceanmap/R/check_ts.r
oceanmap/R/get.bathy.r
oceanmap/R/param_unconvert.r
oceanmap/R/get.grid.res.r
oceanmap/R/bindate2Title.r
oceanmap/R/name_join.r
oceanmap/R/plotmap.r
oceanmap/R/cust.colorbar.r
oceanmap/R/sysdata.rda
oceanmap/R/check_gzfiles.r
oceanmap/R/readbin.r
oceanmap/R/nc2time.r
oceanmap/R/bindate2ylab.r
oceanmap/R/region2SpatialPolygon.r
oceanmap/R/get.worldmap.r
oceanmap/R/name_split.r
oceanmap/R/param_convert.r
oceanmap/R/add.region.r
oceanmap/R/delete.region.r
oceanmap/R/figure.r
oceanmap/R/set.colorbarp.r
oceanmap/R/regions.r
oceanmap/R/nc2raster.r
oceanmap/R/v.gz.r
oceanmap/R/matrix2raster.r
oceanmap/R/v.r
oceanmap/R/set.colorbar.r
oceanmap/R/digits.r
oceanmap/R/v.plot.r
oceanmap/R/clim_plot.r
oceanmap/R/empty.plot.r
oceanmap/MD5
oceanmap/DESCRIPTION
oceanmap/ChangeLog
oceanmap/man
oceanmap/man/regions.Rd
oceanmap/man/name_split.Rd
oceanmap/man/clim_plot.Rd
oceanmap/man/parameter_definitions.Rd
oceanmap/man/check_ts.Rd
oceanmap/man/close_fig.Rd
oceanmap/man/set.colorbar.Rd
oceanmap/man/region_definitions.Rd
oceanmap/man/nc2raster.Rd
oceanmap/man/get.cb.pos.Rd
oceanmap/man/oceanmap.Rd
oceanmap/man/empty.plot.Rd
oceanmap/man/matrix2raster.Rd
oceanmap/man/v.Rd
oceanmap/man/bindate2Title.Rd
oceanmap/man/v-classes.Rd
oceanmap/man/cust.colorbar.Rd
oceanmap/man/param_convert.Rd
oceanmap/man/check_gzfiles.Rd
oceanmap/man/worldmap.Rd
oceanmap/man/delete.region.Rd
oceanmap/man/readbin.Rd
oceanmap/man/writebin.Rd
oceanmap/man/digits.Rd
oceanmap/man/add.region.Rd
oceanmap/man/plotmap.Rd
oceanmap/man/area_extrac.Rd
oceanmap/man/nc2time.Rd
oceanmap/man/cmap.Rd
oceanmap/man/figure.Rd
oceanmap/man/region2SpatialPolygon.Rd
oceanmap/man/get.bathy.Rd
oceanmap/man/internal.datasets.Rd
oceanmap/man/name_join.Rd
oceanmap/man/raster2matrix.Rd