newCdmReference: 'cdm_reference' objects constructor

In omopgenerics: Methods and Classes for the OMOP Common Data Model

cdm_reference objects constructor

Description

cdm_reference objects constructor

Usage

newCdmReference(tables, cdmName, cdmVersion = NULL, .softValidation = FALSE)

Arguments

tables	List of tables that are part of the OMOP Common Data Model reference.
cdmName	Name of the cdm object.
cdmVersion	Version of the cdm. Supported versions 5.3 and 5.4.
.softValidation	Whether to perform a soft validation of consistency. If set to FALSE, non overlapping observation periods are ensured.

Value

A cdm_reference object.

Examples

library(omopgenerics)
library(dplyr, warn.conflicts = FALSE)

cdmTables <- list(
  "person" = tibble(
    person_id = 1, gender_concept_id = 0, year_of_birth = 1990,
    race_concept_id = 0, ethnicity_concept_id = 0
  ) |>
    newCdmTable(newLocalSource(), "person"),
  "observation_period" = tibble(
    observation_period_id = 1, person_id = 1,
    observation_period_start_date = as.Date("2000-01-01"),
    observation_period_end_date = as.Date("2023-12-31"),
    period_type_concept_id = 0
  ) |>
    newCdmTable(newLocalSource(), "observation_period")
)
cdm <- newCdmReference(tables = cdmTables, cdmName = "mock")

cdm

omopgenerics documentation built on Sept. 30, 2024, 9:16 a.m.