validateCohortIdArgument: Validate cohortId argument. CohortId can either be a...

In omopgenerics: Methods and Classes for the OMOP Common Data Model

Validate cohortId argument. CohortId can either be a cohort_definition_id value, a cohort_name or a tidyselect expression referinc to cohort_names. If you want to support tidyselect expressions please use the function as: validateCohortIdArgument({{cohortId}}, cohort).

Description

Validate cohortId argument. CohortId can either be a cohort_definition_id value, a cohort_name or a tidyselect expression referinc to cohort_names. If you want to support tidyselect expressions please use the function as: validateCohortIdArgument({{cohortId}}, cohort).

Usage

validateCohortIdArgument(
  cohortId,
  cohort,
  null = TRUE,
  validation = "error",
  call = parent.frame()
)

Arguments

cohortId	A cohortId vector to be validated.
cohort	A cohort_table object.
null	Whether NULL is accepted. If NULL all cohortId will be returned.
validation	How to perform validation: "error", "warning".
call	A call argument to pass to cli functions.

Examples

cdm <- cdmFromTables(
  tables = list(
    "person" = dplyr::tibble(
      person_id = c(1, 2, 3), gender_concept_id = 0, year_of_birth = 1990,
      race_concept_id = 0, ethnicity_concept_id = 0
    ),
    "observation_period" = dplyr::tibble(
      observation_period_id = 1:3, person_id = 1:3,
      observation_period_start_date = as.Date("2000-01-01"),
      observation_period_end_date = as.Date("2023-12-31"),
      period_type_concept_id = 0
    )
   ),
   cohortTables = list(
    cohort = dplyr::tibble(
      cohort_definition_id = 1L,
      subject_id = 1L,
      cohort_start_date = as.Date("2020-01-01"),
      cohort_end_date = as.Date("2021-02-10")
    )
  ),
  cdmName = "mock"
)

validateCohortIdArgument(NULL, cdm$cohort)
validateCohortIdArgument(1L, cdm$cohort)
validateCohortIdArgument(2L, cdm$cohort, validation = "warning")

omopgenerics documentation built on April 3, 2025, 8:47 p.m.