validateConceptSetArgument: Validate conceptSet argument. It can either be a list, a...

In omopgenerics: Methods and Classes for the OMOP Common Data Model

Validate conceptSet argument. It can either be a list, a codelist, a concept set expression or a codelist with details. The output will always be a codelist.

Description

Validate conceptSet argument. It can either be a list, a codelist, a concept set expression or a codelist with details. The output will always be a codelist.

Usage

validateConceptSetArgument(
  conceptSet,
  cdm = NULL,
  empty = TRUE,
  validation = "error",
  nm = deparse1(substitute(conceptSet), backtick = TRUE),
  call = parent.frame()
)

Arguments

conceptSet	It can be either a named list of concepts or a codelist, codelist_with_details or concept_set_expression object.
cdm	A ⁠<cdm_reference>⁠ object. If provided, concept IDs in the resulting codelist will be checked against cdm$concept. It is also needed if a concept_set_expression with descendants is provided.
empty	Whether it can be empty.
validation	How to perform validation: "error", "warning".
nm	Name to use in error messages. Defaults to the expression supplied to conceptSet.
call	Call argument passed to cli functions.

Value

A codelist object.

Examples

conceptSet <- list(disease_x = c(1L, 2L))
validateConceptSetArgument(conceptSet)

omopgenerics documentation built on June 17, 2026, 5:07 p.m.