annot_char_grep: Annotate a character statement with ontology terms

In ontoFAST: Interactive Annotation of Characters with Biological Ontologies

Description

Matches character statement and returns most similar ontology terms

Usage

annot_char_grep(ontology, char.statement, use.synonyms = TRUE, min_set = TRUE)

Arguments

ontology	ontology.
char.statement	character statement
use.synonyms	if TRUE then the synonyms are used during search. The synonyms have to be included in the ontology using syn_extract() function
min_set	if TRUE eliminates higher order inferred ontology terms

Value

The vector of matches ontology terms.

Examples

data(HAO)
annot_char_grep(HAO, "Mola on right mandible")

ontoFAST documentation built on April 29, 2021, 9:06 a.m.