Scarab: A modified Hymenoptera Anatomy Ontology (HAO) to accommodate...

Description Usage Format References Examples

Description

Anatomy ontology of Hymenoptera + Dung beetles. This ontology was imported into R using get_OBO() function from ontologyIndex packages (see the examples). The added terms for dung beetle anatomy have prefix "SCR".

Usage

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Format

List containing various ontological relationships and terms.

References

Yoder MJ, Mikó I, Seltmann KC, Bertone MA, Deans AR. 2010. A Gross Anatomy Ontology for Hymenoptera. PLoS ONE 5 (12): e15991. (Read)

Hymenoptera Anatomy Ontology Portal

Examples

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data(Scarab)
#you can also parse the original .obo file
get_OBO(system.file("data_onto", "HAO4scarabs.obo", package = "ontoFAST"),
extract_tags="everything", propagate_relationships = c("BFO:0000050", "is_a"))

ontoFAST documentation built on April 29, 2021, 9:06 a.m.

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