make_shiny_in: Make an ontology object for visualization
In ontoFAST: Interactive Annotation of Characters with Biological Ontologies
Description
Usage
Arguments
Value
Examples
View source: R/Viz_manipul_main.R
Description
Make an ontology object for visualization in a separate environment "ontofast"
Usage
1
make_shiny_in(ontology)
Arguments
ontology
Ontology
Value
Ontology index object named as shiny_in.
Examples
1
2
3
4
5
6
data(Sharkey_2011)
data(HAO)
hao_obo<-onto_process(HAO, Sharkey_2011[,1], do.annot = FALSE)
ontofast <- new.env(parent = emptyenv())
ontofast$shiny_in <- make_shiny_in(hao_obo)
runOntoFast(is_a = c("is_a"), part_of = c("BFO:0000050"), shiny_in="shiny_in" )
ontoFAST documentation built on April 29, 2021, 9:06 a.m.
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Description Usage Arguments Value Examples
View source: R/Viz_manipul_main.R
Description
Make an ontology object for visualization in a separate environment "ontofast"
Usage
1 | make_shiny_in(ontology)
|
Arguments
ontology |
Ontology |
Value
Ontology index object named as shiny_in.
Examples
1 2 3 4 5 6 | data(Sharkey_2011)
data(HAO)
hao_obo<-onto_process(HAO, Sharkey_2011[,1], do.annot = FALSE)
ontofast <- new.env(parent = emptyenv())
ontofast$shiny_in <- make_shiny_in(hao_obo)
runOntoFast(is_a = c("is_a"), part_of = c("BFO:0000050"), shiny_in="shiny_in" )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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