Description Usage Arguments Details Value Author(s) References Examples

When conducting power calculations, one is often interested in examining power for various 'effect sizes'. Suppose the logistic regression is specified via the vector of coefficients (`beta0`

, `betaX`

); the first element is the intercept and the second consists of a vector of log odds ratio parameters. In many settings, the overall outcome prevalence in the population of interest is known or, at least, fixed. Modifying any given element of `betaX`

will automatically modify the overall prevalence, unless there is a corresponding change in `beta0`

. The function `beta0()`

calculates the value of `beta0`

that minimizes the difference between the target outcome prevalence, `rhoY`

, and prevalence induced by the model in conjuction with the assumed marginal exposure distribution.

1 | ```
beta0(betaX, X, N, rhoY, expandX="all")
``` |

`betaX` |
Numeric vector of log-odds ratio parameters for the logistic regression model. |

`X` |
Design matrix for the logistic regression model. The first column should correspond to intercept. For each exposure, the baseline group should be coded as 0, the first level as 1, and so on. |

`N` |
A numeric vector providing the sample size for each row of the design matrix, |

`rhoY` |
Target outcome prevalence in the population. |

`expandX` |
Character vector indicating which columns of |

The minimization is performed using the `optimize`

function.

Numeric value of the intercept parameter in a logistic regression model.

Sebastien Haneuse, Takumi Saegusa

Haneuse, S. and Saegusa, T. and Lumley, T. (2011) "osDesign: An R Package for the Analysis, Evaluation, and Design of Two-Phase and Case-Control Studies." Journal of Statistical Software, 43(11), 1-29.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 | ```
##
data(Ohio)
##
XM <- cbind(Int=1, Ohio[,1:3])
fitM <- glm(cbind(Death, N-Death) ~ factor(Age) + Sex + Race, data=Ohio,
family=binomial)
## Overall prevalence in the observed data
##
sum(Ohio$Death)/sum(Ohio$N)
## Intercept corresponding to the original vector of log-odds ratios
##
fitM$coef
beta0(betaX=fitM$coef[-1], X=XM, N=Ohio$N, rhoY=sum(Ohio$Death)/sum(Ohio$N))
## Reduction of Sex effect by 50%
##
betaXm <- fitM$coef[-1]
betaXm[3] <- betaXm[3] * 0.5
beta0(betaX=betaXm, X=XM, N=Ohio$N, rhoY=sum(Ohio$Death)/sum(Ohio$N))
## Doubling of Race effect
##
betaXm <- fitM$coef[-1]
betaXm[4] <- betaXm[4] * 2
beta0(betaX=betaXm, X=XM, N=Ohio$N, rhoY=sum(Ohio$Death)/sum(Ohio$N))
``` |

osDesign documentation built on May 29, 2017, 8:45 p.m.

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.