This package contains functions to calculate the Specificity Index statistic, which can be used for comparative quantitative analysis to identify genes enriched in specific cell populations across a large number of profiles, as well as perform numerous post-processing operations. NOTE:Supplementary data (human & mouse expression sets, calculated pSI datasets, etc.) can be found in pSI.data package located at the following URL: http://genetics.wustl.edu/jdlab/psi_package/
|Author||Xiaoxiao Xu, Alan B. Wells, David OBrien, Arye Nehorai, Joseph D. Dougherty|
|Date of publication||2014-01-30 21:12:44|
|Maintainer||Alan B. Wells <firstname.lastname@example.org>|
|License||GPL (>= 2)|
candidate.genes: Candidate Gene Lists
candidate.overlap: Candidate Gene Overlap
dataset.s1: Supplementary Data Set 1
fisher.iteration: Fisher's Exact Test Across All Cell Types & pSI Thresholds
pSI.count: Convert pSI output to gene count list
pSI.list: Convert pSI output to gene list
pSI-package: Specificity Index Statistic
sample.data: Sample Input & Output pSI Data Sets
specificity.index: Specificity Index Statistic
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