pSI: Specificity Index Statistic

This package contains functions to calculate the Specificity Index statistic, which can be used for comparative quantitative analysis to identify genes enriched in specific cell populations across a large number of profiles, as well as perform numerous post-processing operations. NOTE:Supplementary data (human & mouse expression sets, calculated pSI datasets, etc.) can be found in pSI.data package located at the following URL: http://genetics.wustl.edu/jdlab/psi_package/

Author
Xiaoxiao Xu, Alan B. Wells, David OBrien, Arye Nehorai, Joseph D. Dougherty
Date of publication
2014-01-30 21:12:44
Maintainer
Alan B. Wells <awells@dsgmail.wustl.edu>
License
GPL (>= 2)
Version
1.1

View on CRAN

Man pages

candidate.genes
Candidate Gene Lists
candidate.overlap
Candidate Gene Overlap
dataset.s1
Supplementary Data Set 1
fisher.iteration
Fisher's Exact Test Across All Cell Types & pSI Thresholds
pSI.count
Convert pSI output to gene count list
pSI.list
Convert pSI output to gene list
pSI-package
Specificity Index Statistic
sample.data
Sample Input & Output pSI Data Sets
specificity.index
Specificity Index Statistic

Files in this package

pSI
pSI/NAMESPACE
pSI/NEWS
pSI/data
pSI/data/candidate.genes.rda
pSI/data/dataset.s1.rda
pSI/data/sample.data.rda
pSI/R
pSI/R/dataset.s1.R
pSI/R/fisher.R
pSI/R/pSI.list.R
pSI/R/specificity.index.R
pSI/R/pSI.count.R
pSI/R/fisher.iteration.R
pSI/R/sample.data.R
pSI/R/candidate.genes.R
pSI/R/candidate.overlap.R
pSI/MD5
pSI/DESCRIPTION
pSI/man
pSI/man/sample.data.Rd
pSI/man/candidate.genes.Rd
pSI/man/pSI.list.Rd
pSI/man/pSI.count.Rd
pSI/man/fisher.iteration.Rd
pSI/man/dataset.s1.Rd
pSI/man/pSI-package.Rd
pSI/man/candidate.overlap.Rd
pSI/man/specificity.index.Rd