This list contains 5 candidate gene lists. They are
provided as sample gene lists to be used with
functions found in this package.
Autism spectrum disorder candidate gene list from AutDB (N=328)
Autism spectrum disorder candidate gene list collected from 4 studies published in 2012 (N = 122)
Autism spectrum disorder negative control gene list collected from 4 studies published in 2012 (N = 122)
Narcolepsy Candidate Gene List (N=63)
Human Congenital Retinopathies Disease Gene List (N=120)
NOTE:Supplementary data (human & mouse expression sets,
calculated pSI datasets, etc.) can be found in
pSI.data package located at the following URL:
5 candidate gene lists, each in the form of a character vector, which are contained within one R list.
Hand-curated list of Autism Spectrum Disorder (ASD) candidate genes derived from human genetics studies downloaded from AutDB (N=328)
List of Protein-Disrupting rare de novo variant affected genes in ASD Probands (N = 122)
List of Silent rare de novo variant affected genes in ASD unaffected siblings (N = 122)
List of differentially dysregulated genes from narcoleptic mice with Hcrt neuron ablation versus control (N=63)
List of genes identified in human congenital retinopathies downloaded from the curated RetNet database (N=120)
Basu SN, Kollu R, Banerjee-Basu S (2009): AutDB: a gene reference resource for autism research. Nucleic Acids Research. 37:D832-D836. http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE13379
Iossifov I, Ronemus M, Levy D, Wang Z, Hakker I, Rosenbaum J, et al. (2012): De novo gene disruptions in children on the autistic spectrum. Neuron. 74:285-299.
Neale BM, Kou Y, Liu L, Ma'ayan A, Samocha KE, Sabo A, et al. (2012): Patterns and rates of exonic de novo mutations in autism spectrum disorders. Nature. 485:242-245.
Sanders SJ, Murtha MT, Gupta AR, Murdoch JD, Raubeson MJ, Willsey AJ, et al. (2012): De novo mutations revealed by whole-exome sequencing are strongly associated with autism. Nature. 485:237-241.
O'Roak BJ, Vives L, Girirajan S, Karakoc E, Krumm N, Coe BP, et al. (2012): Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations. Nature. 485:246-250.
Honda M, Eriksson KS, Zhang S, Tanaka S, Lin L, Salehi A, et al. (2009): IGFBP3 colocalizes with and regulates hypocretin (orexin). PLoS One. 4:e4254. http://www.plosone.org/article/info:doi/10.1371/journal.pone.0004254
Daiger, SP. RetNet, the Retinal Information Network. https://sph.uth.edu/RetNet/
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