Man pages for pafr
Read, Manipulate and Visualize 'Pairwise mApping Format' Data
| as_paf | Coerce a data.frame or tibble into a pafr object |
| chrom_sizes | Extract the sizes of all sequences in a paf alignment |
| dotplot | Generate a dot plot from a paf alignment |
| filter_secondary_alignments | Remove secondary alignments from a pafr alignment |
| Gb_lab | Number formatters for scales in base pairs |
| highlight_dotplot | Highlight segments of a query or target genome in a dot plot |
| plot_coverage | Plot the regions of one genome that are covered by alignments... |
| plot_synteny | Plot synteny between a query and target sequence in a PAF... |
| read_bed | Read genomic intervals in bed format |
| read_paf | Read a genomic alignment in PAF format |
| theme_coverage_plot | A minimalistic ggplot2 theme designed for use with genome... |
