chrom_sizes: Extract the sizes of all sequences in a paf alignment
In pafr: Read, Manipulate and Visualize 'Pairwise mApping Format' Data
Description
Usage
Arguments
Value
Examples
Description
Extract the sizes of all sequences in a paf alignment
Usage
1
chrom_sizes(ali)
Arguments
ali
pafr or tibble containing the genome alignment (as returned by
read_paf)
Value
list with two elements (tlens and qlens) Each element is a
dataframe with one column of sequence names and another column containing
the length of each sequence
Examples
1
2
ali <- read_paf( system.file("extdata", "fungi.paf", package="pafr") )
chrom_sizes(ali)
pafr documentation built on Dec. 8, 2020, 5:06 p.m.
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Description Usage Arguments Value Examples
Description
Extract the sizes of all sequences in a paf alignment
Usage
1 | chrom_sizes(ali)
|
Arguments
ali |
pafr or tibble containing the genome alignment (as returned by
|
Value
list with two elements (tlens and qlens) Each element is a dataframe with one column of sequence names and another column containing the length of each sequence
Examples
1 2 | ali <- read_paf( system.file("extdata", "fungi.paf", package="pafr") )
chrom_sizes(ali)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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