Description Usage Arguments Examples
Generate a dot plot from a paf alignment
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ali |
pafr or tibble containing the genome alignment (as returned by
|
order_by |
How the query and target sequences should be ordered in the
dot plot. Option must be one of 'size' (smallest-to-largest), 'qstart' (query organised
smallest to largest, target by first match in the query genome) or 'provided'
(ordering as specified in the |
label_seqs |
boolean If TRUE, label centre of query and target sequences in margins of the dot plot |
dashes |
boolean If TRUE, add dashes to borders of query and target sequences in the dot plot |
ordering |
If |
alignment_colour |
character The colour used to draw each aligned section in the dot plot (defaults to black) |
xlab |
character The x-axis label (defaults to 'query') |
ylab |
character The y-axis label (defaults to 'target') |
line_size |
The width of the line used to represent an alignment in the dot plot (defaults to 2) |
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