filter_secondary_alignments: Remove secondary alignments from a pafr alignment
In pafr: Read, Manipulate and Visualize 'Pairwise mApping Format' Data
Description
Usage
Arguments
Examples
Description
Remove secondary alignments from a pafr alignment
Usage
1
filter_secondary_alignments(ali, remove_inversions = FALSE)
Arguments
ali
Genomic alignment in pafr or tbl_df format, as
returned by read_paf
remove_inversions
logical If TRUE, also remove inversions (tp
flag 'I' or 'i') from the alignment
Examples
1
2
3
ali <- read_paf( system.file("extdata", "fungi.paf", package="pafr") )
ali
filter_secondary_alignments(ali)
pafr documentation built on Dec. 8, 2020, 5:06 p.m.
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Description Usage Arguments Examples
Description
Remove secondary alignments from a pafr alignment
Usage
1 | filter_secondary_alignments(ali, remove_inversions = FALSE)
|
Arguments
ali |
Genomic alignment in |
remove_inversions |
logical If TRUE, also remove inversions (tp flag 'I' or 'i') from the alignment |
Examples
1 2 3 | ali <- read_paf( system.file("extdata", "fungi.paf", package="pafr") )
ali
filter_secondary_alignments(ali)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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