extendedP2proc: Perform extended 'Pagoda2' processing. Generate organism...
In pagoda2: Single Cell Analysis and Differential Expression
View source: R/pipelineHelpers.R
extendedP2proc R Documentation
Perform extended 'Pagoda2' processing.
Generate organism specific GO environment and calculate pathway overdispersion.
Description
Perform extended 'Pagoda2' processing.
Generate organism specific GO environment and calculate pathway overdispersion.
Usage
extendedP2proc(p2, organism = "hs")
Arguments
p2
the 'Pagoda2' object
organism
character Organisms hs (Homo Sapiens), mm (M. Musculus, mouse) or dr (D. Rerio, zebrafish) (default='hs')
Value
list of a 'Pagoda2' object and go.env
pagoda2 documentation built on June 24, 2024, 9:09 a.m.
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View source: R/pipelineHelpers.R
| extendedP2proc | R Documentation |
Perform extended 'Pagoda2' processing. Generate organism specific GO environment and calculate pathway overdispersion.
Description
Perform extended 'Pagoda2' processing. Generate organism specific GO environment and calculate pathway overdispersion.
Usage
extendedP2proc(p2, organism = "hs")
Arguments
p2 |
the 'Pagoda2' object |
organism |
character Organisms hs (Homo Sapiens), mm (M. Musculus, mouse) or dr (D. Rerio, zebrafish) (default='hs') |
Value
list of a 'Pagoda2' object and go.env
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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