get.de.geneset: Generate differential expression genesets for the web app...
In pagoda2: Single Cell Analysis and Differential Expression
View source: R/pipelineHelpers.R
get.de.geneset R Documentation
Generate differential expression genesets for the web app given a cell grouping by
calculating DE sets between each cell set and everything else
Description
Generate differential expression genesets for the web app given a cell grouping by
calculating DE sets between each cell set and everything else
Usage
get.de.geneset(pagObj, groups, prefix = "de_")
Arguments
pagObj
pagoda object
groups
named factor to do the de by
prefix
chararcter Prefix to assign to genesets generated (default="de_")
Value
a 'pagoda2' web object
pagoda2 documentation built on June 24, 2024, 9:09 a.m.
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View source: R/pipelineHelpers.R
| get.de.geneset | R Documentation |
Generate differential expression genesets for the web app given a cell grouping by calculating DE sets between each cell set and everything else
Description
Generate differential expression genesets for the web app given a cell grouping by calculating DE sets between each cell set and everything else
Usage
get.de.geneset(pagObj, groups, prefix = "de_")
Arguments
pagObj |
pagoda object |
groups |
named factor to do the de by |
prefix |
chararcter Prefix to assign to genesets generated (default="de_") |
Value
a 'pagoda2' web object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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