get.control.geneset: Get a control geneset for cell scoring using the method...

In pagoda2: Single Cell Analysis and Differential Expression

Get a control geneset for cell scoring using the method described in Puram, Bernstein (Cell, 2018)

Description

Get a control geneset for cell scoring using the method described in Puram, Bernstein (Cell, 2018)

Usage

get.control.geneset(data, signature, n.bins = 25, n.genes.per.bin = 100)

Arguments

data	matrix of expression, rows are cell, columns are genes
signature	character vector The signature to evaluate, a character vector of genes
n.bins	numeric Number of bins to put the genes in (default=25)
n.genes.per.bin	numeric Number of genes to get from each bin (default=100)

Value

a character vector that can be used as a background signature

pagoda2 documentation built on June 24, 2024, 9:09 a.m.