p2.metadata.from.factor: Generate a list metadata structure that can be passed to a...

In pagoda2: Single Cell Analysis and Differential Expression

Generate a list metadata structure that can be passed to a 'pagoda2' web object constructor as additional metadata given a named factor

Description

Generate a list metadata structure that can be passed to a 'pagoda2' web object constructor as additional metadata given a named factor

Usage

p2.metadata.from.factor(
  metadata,
  displayname = NULL,
  s = 1,
  v = 1,
  start = 0,
  end = NULL,
  pal = NULL
)

Arguments

metadata	named factor with metadata for individual cells, names must correspond to cells
displayname	character Name to display for the metadata (default=NULL)
s	numeric Value for rainbow palette (default=1)
v	numeric Value for rainbow palette (default=1)
start	numeric Starting value (default=0)
end	numeric Ending value (default=NULL)
pal	optional vector of colours to use, if provided overrides s,v,start and end parameters (default=NULL)

Value

list of data, levels, palette to be passed to 'pagoda2' web object constructor

pagoda2 documentation built on June 24, 2024, 9:09 a.m.