paleobioDB: Download and Process Data from the Paleobiology Database
Version 0.5.0

Includes 19 functions to wrap each endpoint of the PaleobioDB API, plus 8 functions to visualize and process the fossil data. The API documentation for the Paleobiology Database can be found in .

AuthorSara Varela [aut, cre], Javier González Hernández [aut], Luciano Fabris Sgarbi [aut]
Date of publication2016-09-02 12:14:24
MaintainerSara Varela <svarela@paleobiogeography.org>
LicenseGPL-2
Version0.5.0
URL https://github.com/ropensci/paleobioDB
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("paleobioDB")

Getting started

README.md

Popular man pages

paleobioDB: paleobioDB: An R-package for downloading, visualizing and...
pbdb_intervals: pbdb_intervals
pbdb_map_occur: pbdb_map_occur
pbdb_reference: pbdb_reference
pbdb_scale: pbdb_scale
pbdb_scales: pbdb_scales
pbdb_taxa_auto: pbdb_taxa_auto
See all...

All man pages Function index File listing

Man pages

paleobioDB: paleobioDB: An R-package for downloading, visualizing and...
pbdb_collection: pbdb_collection
pbdb_collections: pbdb_collections
pbdb_collections_geo: pbdb_collections_geo
pbdb_interval: pbdb_interval
pbdb_intervals: pbdb_intervals
pbdb_map: pbdb_map
pbdb_map_occur: pbdb_map_occur
pbdb_map_richness: pbdb_map_richness
pbdb_occurrence: pbdb_occurrence
pbdb_occurrences: pbdb_occurrences
pbdb_orig_ext: pbdb_orig_ext
pbdb_ref_collections: pbdb_ref_collections
pbdb_reference: pbdb_reference
pbdb_references: pbdb_references
pbdb_ref_occurrences: pbdb_ref_occurrences
pbdb_ref_taxa: pbdb_ref_taxa
pbdb_richness: pbdb_richness
pbdb_scale: pbdb_scale
pbdb_scales: pbdb_scales
pbdb_strata: pbdb_strata
pbdb_strata_auto: pbdb_strata_auto
pbdb_subtaxa: pbdb_subtaxa
pbdb_taxa: pbdb_taxa
pbdb_taxa_auto: pbdb_taxa_auto
pbdb_taxon: pbdb_taxon
pbdb_temporal_resolution: pbdb_temporal_resolution
pbdb_temp_range: pbdb_temp_range

Functions

Raster Source code
add.ColOcean Source code
add.ColOcean2 Source code
add.Legend Source code
add.Points Source code
add.pattern Source code
build_query_string Source code
build_uri Source code
collapse_array_columns_map Source code
default_uri_builder Source code
extract.LatLong Source code
extract.rank.all Source code
extract.rank.specie Source code
extract_response_body Source code
get_data_from_uri Source code
make_data_frame Source code
mplode_to_string Source code
package_cache_delete Source code
package_cache_empty Source code
package_cache_get Source code
package_cache_has Source code
package_cache_return_or_setup Source code
package_cache_set Source code
paleobioDB Man page
paleobioDB-package Man page
parse_raw_data Source code
pbdb_collection Man page Source code
pbdb_collections Man page Source code
pbdb_collections_geo Man page Source code
pbdb_interval Man page Source code
pbdb_intervals Man page Source code
pbdb_map Man page Source code
pbdb_map_occur Man page Source code
pbdb_map_richness Man page Source code
pbdb_occurrence Man page Source code
pbdb_occurrences Man page Source code
pbdb_orig_ext Man page Source code
pbdb_query Source code
pbdb_ref_collections Man page Source code
pbdb_ref_occurrences Man page Source code
pbdb_ref_taxa Man page Source code
pbdb_reference Man page Source code
pbdb_references Man page Source code
pbdb_richness Man page Source code
pbdb_scale Man page Source code
pbdb_scales Man page Source code
pbdb_set_up_endpoints Source code
pbdb_setup Source code
pbdb_strata Man page Source code
pbdb_strata_auto Man page Source code
pbdb_subtaxa Man page Source code
pbdb_taxa Man page Source code
pbdb_taxa_auto Man page Source code
pbdb_taxon Man page Source code
pbdb_temp_range Man page Source code
pbdb_temporal_resolution Man page Source code
pbdb_uri_builder Source code
plot.Raster.rich Source code
set_api_base Source code
setup_api_endpoint Source code
stop_on_missing_param Source code

Files

tests
tests/testthat
tests/testthat/test-all_basic_queries.R
tests/testthat/test-parse_api_data.R
tests/testthat/test-geographic_functions.R
tests/testthat/test-pbdb_api_query.R
tests/testthat/test-temporal_functions.R
tests/testthat/test-apitools.R
tests/testthat/test-taxonomic_functions.R
NAMESPACE
R
R/paleobioDB-package.R
R/pbdb_geographic_functions.R
R/network.R
R/pbdb_temporal_functions.R
R/pbdb_querys.R
R/pbdb_cache.R
R/rest_api_tools.R
R/pbdb_taxonomic_functions.R
R/pbdb_rest_api_setup.R
README.md
MD5
DESCRIPTION
man
man/pbdb_strata_auto.Rd
man/pbdb_collections_geo.Rd
man/pbdb_taxon.Rd
man/pbdb_references.Rd
man/pbdb_taxa.Rd
man/pbdb_ref_occurrences.Rd
man/pbdb_map.Rd
man/pbdb_richness.Rd
man/pbdb_ref_collections.Rd
man/pbdb_temporal_resolution.Rd
man/pbdb_orig_ext.Rd
man/paleobioDB.Rd
man/pbdb_collections.Rd
man/pbdb_map_richness.Rd
man/pbdb_ref_taxa.Rd
man/pbdb_collection.Rd
man/pbdb_subtaxa.Rd
man/pbdb_temp_range.Rd
man/pbdb_reference.Rd
man/pbdb_occurrence.Rd
man/pbdb_map_occur.Rd
man/pbdb_interval.Rd
man/pbdb_scale.Rd
man/pbdb_intervals.Rd
man/pbdb_strata.Rd
man/pbdb_occurrences.Rd
man/pbdb_scales.Rd
man/pbdb_taxa_auto.Rd
paleobioDB documentation built on May 19, 2017, 7:32 a.m.

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