getExprSet: download exprSet data

In pancor: Calculation and Plot of Gene Correlationship in TCGA/GTEx/CCLE

Description

download exprSet data

Usage

getExprSet(file = "", outdir = ".", dir = "pub", url = NULL,
  user = NULL, password = NULL)

Arguments

file	one of pancancer_mRNA_exprSet.Rdata panCCLE_mRNA_exprSet.Rdata panGTEX_mRNA_exprSet.Rdata
outdir	data store directory
dir	ftp directory
url	ftp url
user	ftp user
password	ftp password

Value

a .Rdata file in working directory

Author(s)

Zhougeng Xu

Examples

temp_dir <- tempdir()
getExprSet(file = "test.txt", outdir = temp_dir)


# According to CRAN, function cannot modify user's home filespace,
# so when run the example, the data will save at the tempdir.
# You can remove the `outdir = tempdir()` to let the .Rdata save to
# your current directory
getExprSet(file = "pancancer_mRNA_exprSet.Rdata", outdir = tempdir())

pancor documentation built on Oct. 30, 2019, 10:04 a.m.