ggcorplot: correlationship between two gene in single or all cancer
In pancor: Calculation and Plot of Gene Correlationship in TCGA/GTEx/CCLE
Description
Usage
Arguments
Value
Author(s)
Examples
Description
correlationship between two gene in single or all cancer
Usage
1
2
Arguments
data
data.frame
gene1
charactor of gene name, e.g. "METTL3"
gene2
charactor of gene name, e.g. "SETD2"
type
a kind of cancer, like BRCA, default is ALL
cor.test.method
cor.test method, one of
"pearson", "kendall", "spearman", default is "pearsson"
Value
a ggplot object
Author(s)
Shipeng Guo, Zhougeng Xu
Examples
1
2
3
4
5
data(pancancer_small)
p <- ggcorplot(pancancer_small, "METTL3","SETD2")
p
p <- ggcorplot(pancancer_small, "METTL3","SETD2", "BRCA")
p
pancor documentation built on Oct. 30, 2019, 10:04 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
correlationship between two gene in single or all cancer
Usage
1 2 |
Arguments
data |
data.frame |
gene1 |
charactor of gene name, e.g. "METTL3" |
gene2 |
charactor of gene name, e.g. "SETD2" |
type |
a kind of cancer, like BRCA, default is ALL |
cor.test.method |
cor.test method, one of "pearson", "kendall", "spearman", default is "pearsson" |
Value
a ggplot object
Author(s)
Shipeng Guo, Zhougeng Xu
Examples
1 2 3 4 5 | data(pancancer_small)
p <- ggcorplot(pancancer_small, "METTL3","SETD2")
p
p <- ggcorplot(pancancer_small, "METTL3","SETD2", "BRCA")
p
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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