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pastis: Phylogenetic Assembly with Soft Taxonomic Inferences
A pre-processor for mrBayes that assimilates sequences, taxonomic information and tree constraints as per xxx. The main functions of interest for most users will be pastis_simple, pastis_main and conch. The main analysis is conducted with pastis_simple or pastis_main followed by a manual execution of mrBayes (>3.2). The placement of taxa not contained in the tree constraint can be investigated using conch.
Getting started
Browse package contents
Package details |
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| Author | Klaas Hartmann, Gavin Thomas, Arne Mooers, Jeffrey Joy, Walter Jetz |
| Maintainer | Gavin Thomas <gavin.thomas@sheffield.ac.uk> |
| License | GPL (>= 3) |
| Version | 0.1-2 |
| URL | http://cran.r-project.org/web/packages/pastis/ |
| Package repository | View on CRAN |
| Installation |
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