pastis: Phylogenetic Assembly with Soft Taxonomic Inferences
Version 0.1-2

A pre-processor for mrBayes that assimilates sequences, taxonomic information and tree constraints as per xxx. The main functions of interest for most users will be pastis_simple, pastis_main and conch. The main analysis is conducted with pastis_simple or pastis_main followed by a manual execution of mrBayes (>3.2). The placement of taxa not contained in the tree constraint can be investigated using conch.

Package details

AuthorKlaas Hartmann, Gavin Thomas, Arne Mooers, Jeffrey Joy, Walter Jetz
Date of publication2013-09-11 15:23:31
MaintainerGavin Thomas <[email protected]>
LicenseGPL (>= 3)
Version0.1-2
URL http://cran.r-project.org/web/packages/pastis/
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("pastis")

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pastis documentation built on May 29, 2017, 9:08 p.m.