pastis: Phylogenetic Assembly with Soft Taxonomic Inferences

A pre-processor for mrBayes that assimilates sequences, taxonomic information and tree constraints as per xxx. The main functions of interest for most users will be pastis_simple, pastis_main and conch. The main analysis is conducted with pastis_simple or pastis_main followed by a manual execution of mrBayes (>3.2). The placement of taxa not contained in the tree constraint can be investigated using conch.

Package details

AuthorKlaas Hartmann, Gavin Thomas, Arne Mooers, Jeffrey Joy, Walter Jetz
MaintainerGavin Thomas <>
LicenseGPL (>= 3)
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the pastis package in your browser

Any scripts or data that you put into this service are public.

pastis documentation built on May 2, 2019, 7:24 a.m.