Phylogenetic Assembly with Soft Taxonomic Inferences.
Package: | pastis |
Type: | Package |
Version: | 0.1-2 |
Date: | 2013-9-11 |
Depends: | caper (>= 0.5.0), ape (>= 3.0.0) |
Encoding: | UTF-8 |
License: | GPL (>= 3) |
LazyLoad: | yes |
URL: | http://cran.r-project.org/web/packages/pastis/ |
A pre-processor for mrBayes that assimilates sequences, taxonomic information and tree constraints. The main functions of interest for most users will be pastis_simple, pastis_main and conch. The main analysis is conducted with pastis_simple or pastis_main followed by a manual execution of mrBayes (>3.2). The placement of taxa not contained in the tree constraint can be investigated using conch.
Klaas Hartmann klaas.hartmann@utas.edu.au Gavin Thomas gavin.thomas@sheffield.ac.uk
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