patPRO: Visualizing Temporal Microbiome Data

Quickly and easily visualize longitudinal microbiome profiles using standard output from the QIIME microbiome analysis toolkit (see <http://qiime.org> for more information).

Install the latest version of this package by entering the following in R:
install.packages("patPRO")
AuthorHannigan GD, Loesche MA, Hodkinson BP, Mehta S, Grice EA
Date of publication2016-02-02 17:25:52
MaintainerGeoffrey D Hannigan <ghanni@upenn.edu>
LicenseGPL-3
Version1.1.0

View on CRAN

Functions

mergeMapMetaData Man page
normalizeAlphaDiv Man page
patientMean Man page
patPRO Man page
PatProAlphaDiv Man page
PatProBacLoad Man page
PatProMap Man page
PatProOTU Man page
patPRO-package Man page
patproPlotThree Man page
patproPlotTwo Man page
plotBacterialLoad Man page
plotNormalizedAlphaDiv Man page
plotTopTaxa Man page
plotTopTaxaMean Man page
topAbsAbundDataFrame Man page
topAbsAbundPlot Man page
topRelAbundDataFrame Man page
transposeRelAbund Man page

Files

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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