patPRO: Visualizing Temporal Microbiome Data

Quickly and easily visualize longitudinal microbiome profiles using standard output from the QIIME microbiome analysis toolkit (see <http://qiime.org> for more information).

AuthorHannigan GD, Loesche MA, Hodkinson BP, Mehta S, Grice EA
Date of publication2016-02-02 17:25:52
MaintainerGeoffrey D Hannigan <ghanni@upenn.edu>
LicenseGPL-3
Version1.1.0

View on CRAN

Functions

mergeMapMetaData Man page
normalizeAlphaDiv Man page
patientMean Man page
patPRO Man page
PatProAlphaDiv Man page
PatProBacLoad Man page
PatProMap Man page
PatProOTU Man page
patPRO-package Man page
patproPlotThree Man page
patproPlotTwo Man page
plotBacterialLoad Man page
plotNormalizedAlphaDiv Man page
plotTopTaxa Man page
plotTopTaxaMean Man page
topAbsAbundDataFrame Man page
topAbsAbundPlot Man page
topRelAbundDataFrame Man page
transposeRelAbund Man page

Files

patPRO
patPRO/inst
patPRO/inst/extdata
patPRO/inst/extdata/ExampleQiimeOtuTrauma.tsv
patPRO/inst/extdata/ExampleQiimeAlphaTrauma.tsv
patPRO/inst/extdata/ExampleQiimeMapTrauma.csv
patPRO/inst/extdata/ExampleQiimeBacLoadTrauma.tsv
patPRO/NAMESPACE
patPRO/data
patPRO/data/PatProOTU.RData
patPRO/data/PatProBacLoad.RData
patPRO/data/PatProAlphaDiv.RData
patPRO/data/PatProMap.RData
patPRO/R
patPRO/R/PatPro1.R
patPRO/MD5
patPRO/DESCRIPTION
patPRO/man
patPRO/man/patproPlotTwo.Rd patPRO/man/plotNormalizedAlphaDiv.Rd patPRO/man/topAbsAbundPlot.Rd patPRO/man/plotTopTaxaMean.Rd patPRO/man/normalizeAlphaDiv.Rd patPRO/man/mergeMapMetaData.Rd patPRO/man/plotTopTaxa.Rd patPRO/man/PatProBacLoad.Rd patPRO/man/topAbsAbundDataFrame.Rd patPRO/man/patproPlotThree.Rd patPRO/man/transposeRelAbund.Rd patPRO/man/patientMean.Rd patPRO/man/PatProMap.Rd patPRO/man/PatProAlphaDiv.Rd patPRO/man/PatPro-package.Rd patPRO/man/plotBacterialLoad.Rd patPRO/man/topRelAbundDataFrame.Rd patPRO/man/PatProOTU.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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