patPRO: Visualizing Temporal Microbiome Data

Quickly and easily visualize longitudinal microbiome profiles using standard output from the QIIME microbiome analysis toolkit (see <http://qiime.org> for more information).

AuthorHannigan GD, Loesche MA, Hodkinson BP, Mehta S, Grice EA
Date of publication2016-02-02 17:25:52
MaintainerGeoffrey D Hannigan <ghanni@upenn.edu>
LicenseGPL-3
Version1.1.0

View on CRAN

Files in this package

patPRO
patPRO/inst
patPRO/inst/extdata
patPRO/inst/extdata/ExampleQiimeOtuTrauma.tsv
patPRO/inst/extdata/ExampleQiimeAlphaTrauma.tsv
patPRO/inst/extdata/ExampleQiimeMapTrauma.csv
patPRO/inst/extdata/ExampleQiimeBacLoadTrauma.tsv
patPRO/NAMESPACE
patPRO/data
patPRO/data/PatProOTU.RData
patPRO/data/PatProBacLoad.RData
patPRO/data/PatProAlphaDiv.RData
patPRO/data/PatProMap.RData
patPRO/R
patPRO/R/PatPro1.R
patPRO/MD5
patPRO/DESCRIPTION
patPRO/man
patPRO/man/patproPlotTwo.Rd patPRO/man/plotNormalizedAlphaDiv.Rd patPRO/man/topAbsAbundPlot.Rd patPRO/man/plotTopTaxaMean.Rd patPRO/man/normalizeAlphaDiv.Rd patPRO/man/mergeMapMetaData.Rd patPRO/man/plotTopTaxa.Rd patPRO/man/PatProBacLoad.Rd patPRO/man/topAbsAbundDataFrame.Rd patPRO/man/patproPlotThree.Rd patPRO/man/transposeRelAbund.Rd patPRO/man/patientMean.Rd patPRO/man/PatProMap.Rd patPRO/man/PatProAlphaDiv.Rd patPRO/man/PatPro-package.Rd patPRO/man/plotBacterialLoad.Rd patPRO/man/topRelAbundDataFrame.Rd patPRO/man/PatProOTU.Rd

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