Man pages for patPRO
Visualizing Temporal Microbiome Data

mergeMapMetaDataMerge Mapping and Data Files
normalizeAlphaDivNormalize Alpha Diversity Values for Plotting.
patientMeanCalculate Mean Patient Values.
PatProAlphaDivTest Alpha Diversity Data Used as an Example for patPRO.
PatProBacLoadTest Bacterial Load Data Used as an Example for patPRO.
PatProMapTest Mapping File Data Used as an Example for patPRO.
PatProOTUTest Relative Abundance Data Used as an Example for patPRO.
PatPro-packageLongitudinal Profiler of Microbiome Data
patproPlotThreeGenerate Patient Profile of Three Plots.
patproPlotTwoGenerate Patient Profile of Two Plots.
plotBacterialLoadPlot Supplemental Bacterial Load Information.
plotNormalizedAlphaDivPlot Normalized Alpha Diversity.
plotTopTaxaPlot a Specific Patient Relative Abundance of Top Taxa.
plotTopTaxaMeanPlot the Mean Relative Abundance of Top Taxa.
topAbsAbundDataFrameFormat and Normalize Top Taxa and Bac Load for Plotting.
topAbsAbundPlotPlot Top Taxa Abundance Normalized to Bacterial Load.
topRelAbundDataFrameFormat Top Taxa Data Frame for Graphing.
transposeRelAbundTranspose a Data Frame.
patPRO documentation built on May 29, 2017, 2:28 p.m.