transposeRelAbund: Transpose a Data Frame.

In patPRO: Visualizing Temporal Microbiome Data

Description

This function will transpose a data frame, with the result maintained as a data frame (unlike other functions which work with matrices). Although this was written with relative abundance tables in mind, it may be applied to other data frame types.

Usage

transposeRelAbund(x, 
	sample.id.col="SampleID")

Arguments

x	The relative abundance data.frame (or other type of data.frame) to be transposed.
sample.id.col	The Sample ID column name from data frame x. Default is "SampleID".

Details

Package:	patPRO
Type:	Package
Version:	1.0.0
Date:	2015-09-18
License:	GPLv3

An overview of how to use the package, including the most important functions, is included in the supplemental R notebook patPROExampleWorkflow.html.

Author(s)

Geoffrey Hannigan <[e-mail]>, Loesche MA, Hodkinson BP, Mehta S, Elizabeth Grice <[e-mail]>

References

patPRO: An R package for the visualization of longitudinal microbiome data. Hannigan GD, Loesche MA, Hodkinson BP, Mehta S, Grice EA.

Examples

data("PatProOTU",package="patPRO")
transTestRelAbund <- transposeRelAbund(PatProOTU)

patPRO documentation built on May 1, 2019, 10:56 p.m.