example_mmu_input | R Documentation |
A dataset containing the differentially-expressed genes and adjusted p-values for the GEO dataset GSE99393. The RNA microarray experiment was perform to detail the global program of gene expression underlying polarization of myeloma-associated macrophages by CSF1R antibody treatment. The samples were 6 murine bone marrow derived macrophages co-cultured with myeloma cells (myeloma-associated macrophages), 3 of which were treated with CSF1R antibody (treatment group) and the rest were treated with control IgG antibody (control group). In this dataset, differentially-expressed genes with |logFC| >= 2 and FDR < 0.05 are presented. Generated on 1 Nov 2019.
example_mmu_input
A data frame with 45 rows and 2 variables:
MGI gene symbols of the differentially-expressed genes
adjusted p values, via the Benjamini & Hochberg (1995) method
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE99393
example_mmu_output
for the example mmu enrichment output.
run_pathfindR
for details on the pathfindR enrichment analysis.
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