example_mmu_input: Example Input for Mus musculus - Myeloma Analysis

In pathfindR.data: Data Package for 'pathfindR'

Example Input for Mus musculus - Myeloma Analysis

Description

A dataset containing the differentially-expressed genes and adjusted p-values for the GEO dataset GSE99393. The RNA microarray experiment was perform to detail the global program of gene expression underlying polarization of myeloma-associated macrophages by CSF1R antibody treatment. The samples were 6 murine bone marrow derived macrophages co-cultured with myeloma cells (myeloma-associated macrophages), 3 of which were treated with CSF1R antibody (treatment group) and the rest were treated with control IgG antibody (control group). In this dataset, differentially-expressed genes with |logFC| >= 2 and FDR < 0.05 are presented. Generated on Nov 1, 2019.

Usage

example_mmu_input

Format

A data frame with 45 rows and 2 variables:

Gene_Symbol

MGI gene symbols of the differentially-expressed genes

FDR

adjusted p values, via the Benjamini & Hochberg (1995) method

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE99393

See Also

example_mmu_output for the example mmu enrichment output. run_pathfindR for details on the pathfindR enrichment analysis.

pathfindR.data documentation built on April 27, 2023, 9:07 a.m.