example_mmu_output: Example Output for Mus musculus - Myeloma Analysis

In pathfindR.data: Data Package for 'pathfindR'

Example Output for Mus musculus - Myeloma Analysis

Description

A dataset containing the results of pathfindR's active-subnetwork-oriented enrichment workflow performed on the Mus musculus myeloma differential expression dataset example_mmu_input. Generated on Dec 11, 2022.

Usage

example_mmu_output

Format

A data frame with 26 rows and 9 columns:

ID

ID of the enriched term

Term_Description

Description of the enriched term

Fold_Enrichment

Fold enrichment value for the enriched term

occurrence

the number of iterations that the given term was found to enriched over all iterations

support

the median support (proportion of active subnetworks leading to enrichment within an iteration) over all iterations

lowest_p

the lowest adjusted-p value of the given term over all iterations

highest_p

the highest adjusted-p value of the given term over all iterations

Up_regulated

the up-regulated genes in the input involved in the given term, comma-separated

Down_regulated

the down-regulated genes in the input involved in the given term, comma-separated

See Also

example_mmu_input for the example mmu input. run_pathfindR for details on the pathfindR enrichment workflow.

pathfindR.data documentation built on April 27, 2023, 9:07 a.m.