pcrsim: Simulation of the Forensic DNA Process

Simulate the forensic DNA process: generate random or fixed DNA profiles, create forensic samples including mixtures of diploid and haploid cells, simulate DNA extraction, normalization, degradation, amplification including stutters and inter-locus balance, and capillary electrophoresis. DNA profiles are visualized as electropherograms and saved in tables. The command pcrsim() opens up a graphical user interface which allow the user to create projects, to enter, load, and save parameters required for the simulation. The simulation is transparent and the parameters used in each step of the simulation can be viewed in the result tables.

AuthorOskar Hansson
Date of publication2016-10-03 13:13:20
MaintainerOskar Hansson <oskar.hansson@fhi.no>
LicenseGPL-2
Version1.0.1
https://github.com/OskarHansson/pcrsim

View on CRAN

Files

pcrsim
pcrsim/inst
pcrsim/inst/extdata
pcrsim/inst/extdata/tutorial_pc_ref.txt
pcrsim/inst/extdata/parameters.txt
pcrsim/inst/extdata/tutorial_pc_ref_pcrsim.txt
pcrsim/inst/extdata/tutorial_dil_ref.txt
pcrsim/inst/extdata/tutorial_genotypes_table.txt
pcrsim/inst/extdata/tutorial_strvalidator_project.RData
pcrsim/inst/extdata/tutorial_amount.txt
pcrsim/inst/extdata/tutorial_pcrsim_project.RData
pcrsim/NAMESPACE
pcrsim/NEWS
pcrsim/R
pcrsim/R/rmultinomxl.r
pcrsim/R/simExtraction.r
pcrsim/R/pcrsim.r
pcrsim/R/calibratePCRsim.r
pcrsim/R/simProfile.r
pcrsim/R/simNormalize.r
pcrsim/R/simPCR.r
pcrsim/R/simSample.r
pcrsim/R/calibrateScaling.r
pcrsim/R/globals.R
pcrsim/R/compactStutter.r
pcrsim/R/calibrateLb.r
pcrsim/R/hooks.r
pcrsim/R/getParameter.r
pcrsim/R/simDegradation.r
pcrsim/R/simCE.r
pcrsim/R/calculateDegradation.R
pcrsim/R/compact.r
pcrsim/R/pcrsim-package.r
pcrsim/R/simDilution.r
pcrsim/README.md
pcrsim/MD5
pcrsim/DESCRIPTION
pcrsim/man
pcrsim/man/pcrsim.Rd pcrsim/man/simSample.Rd pcrsim/man/compact.Rd pcrsim/man/simPCR.Rd pcrsim/man/calculateDegradation.Rd pcrsim/man/calibratePCRsim.Rd pcrsim/man/getParameter.Rd pcrsim/man/simCE.Rd pcrsim/man/simProfile.Rd pcrsim/man/simNormalize.Rd pcrsim/man/pcrsim-package.Rd pcrsim/man/simDegradation.Rd pcrsim/man/simExtraction.Rd pcrsim/man/rmultinomxl.Rd pcrsim/man/compactStutter.Rd pcrsim/man/calibrateLb.Rd pcrsim/man/calibrateScaling.Rd pcrsim/man/simDilution.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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All documentation is copyright its authors; we didn't write any of that.