Description Usage Arguments Details Value
Corrects the peak height scaling intercept.
1 2 3 | calibrateScaling(data, ref = NULL, target, c.min = 0, c.max = 10000,
min.step.size = 1e-04, exact.matching = FALSE, progress = FALSE,
.i = 1)
|
data |
data.frame simulated data. |
ref |
data.frame with reference profiles for the simulated data.
If NULL the best guess will be used (see |
target |
numeric target average peak height 'H'. |
c.min |
numeric the smallest correction factor in the current range. |
c.max |
numeric the largest correction factor in the current range. |
min.step.size |
numeric threshold. Exit function when step size is this small. |
exact.matching |
logical to indicate exact reference sample to dataset sample name matching. |
progress |
logical flag to show progress messages. |
.i |
integer internal counter for number of iterations. |
Finds the scaling factor correction that gives the best fit between the simulated peak heights and the target average peak height. This is the final step in calibrating pcrsim for a specific kit and method.
numeric corrected scaling intercept.
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