Quick start: pctax

In pctax: Professional Comprehensive Omics Data Analysis

knitr::opts_chunk$set(
  collapse = TRUE, cache = TRUE,
  comment = "#>",
  dpi = 72
)

library(pctax)
library(pcutils)

pctax

pctax provides a comprehensive suite of tools for analyzing omics data.

Vignette

Please go to https://bookdown.org/Asa12138/pctax_book/ for the full vignette.

Install

install.packages("devtools")
devtools::install_github("Asa12138/pcutils")
devtools::install_github("Asa12138/pctax")

Usage

It includes functionalities for α-diversity analysis, β-diversity analysis, differential abundance analysis, community assembly, visualization of phylogenetic tree and functional enrichment analysis...

Look at the test data:

library(pctax)
library(pcutils)
data(otutab, package = "pcutils")
# help(otutab)

head(otutab)
head(metadata)
head(taxonomy)

Citation

Please cite:

Chen Peng (2023). pctax: Professional Comprehensive Omics Data Analysis. R package, https://github.com/Asa12138/pctax.

pctax documentation built on May 29, 2024, 10:03 a.m.