df2tree: From a dataframe to construct a phylo
In pctax: Professional Comprehensive Omics Data Analysis
df2tree R Documentation
From a dataframe to construct a phylo
Description
NOTE: this function will do before_tree first.
Usage
df2tree(data, edge_df = FALSE)
Arguments
data
dataframe
edge_df
if the data is edge_df ?
Value
phylo object
Examples
data(otutab, package = "pcutils")
df2tree(taxonomy) -> tax_tree
print(tax_tree)
# check all nodes matched!
if (requireNamespace("picante")) {
picante::match.phylo.comm(tax_tree, t(otutab)) -> nn
nrow(nn$comm) == nrow(t(otutab))
}
pctax documentation built on May 29, 2024, 10:03 a.m.
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| df2tree | R Documentation |
From a dataframe to construct a phylo
Description
NOTE: this function will do before_tree first.
Usage
df2tree(data, edge_df = FALSE)
Arguments
data |
dataframe |
edge_df |
if the data is edge_df ? |
Value
phylo object
Examples
data(otutab, package = "pcutils")
df2tree(taxonomy) -> tax_tree
print(tax_tree)
# check all nodes matched!
if (requireNamespace("picante")) {
picante::match.phylo.comm(tax_tree, t(otutab)) -> nn
nrow(nn$comm) == nrow(t(otutab))
}
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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