mat_dist: Calculate distance for otutab
In pctax: Professional Comprehensive Omics Data Analysis
mat_dist R Documentation
Calculate distance for otutab
Description
Calculate distance for otutab
Usage
mat_dist(otutab, method = "bray", spe_nwk = NULL)
Arguments
otutab
an otutab data.frame, samples are columns, taxs are rows.
method
Dissimilarity index, partial match to "bray", "euclidean"...see vegdist;unifrac
spe_nwk
a phylo tree if use unifrac...
Value
dist
Examples
data(otutab, package = "pcutils")
mat_dist(otutab)
pctax documentation built on May 29, 2024, 10:03 a.m.
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| mat_dist | R Documentation |
Calculate distance for otutab
Description
Calculate distance for otutab
Usage
mat_dist(otutab, method = "bray", spe_nwk = NULL)
Arguments
otutab |
an otutab data.frame, samples are columns, taxs are rows. |
method |
Dissimilarity index, partial match to "bray", "euclidean"...see |
spe_nwk |
a phylo tree if use unifrac... |
Value
dist
Examples
data(otutab, package = "pcutils")
mat_dist(otutab)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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