ALDEX: ALDEX

In pctax: Professional Comprehensive Omics Data Analysis

ALDEX

Description

ALDEX

Usage

ALDEX(otutab, group_df)

Arguments

otutab	otutab
group_df	a dataframe with rowname same to dist and one group column

Value

diff

References

https://cloud.tencent.com/developer/article/1621879

Examples

if (requireNamespace("ALDEx2")) {
  data(otutab, package = "pcutils")
  ALDEX(otutab, metadata["Group"]) -> res
  res %>%
    dplyr::top_n(9, -glm.eBH) %>%
    .[, "tax"] -> sig
  data.frame(t(otutab[sig, ])) %>% pcutils::group_box(., "Group", metadata)
}

pctax documentation built on May 29, 2024, 10:03 a.m.