pegas: Population and Evolutionary Genetics Analysis System

Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.

Package details

AuthorEmmanuel Paradis [aut, cre, cph], Thibaut Jombart [aut, cph], Knaus Brian [aut, cph], Klaus Schliep [aut, cph], Alastair Potts [aut, cph], David Winter [aut, cph], Zhian N. Kamvar [aut, cph]
MaintainerEmmanuel Paradis <[email protected]>
LicenseGPL (>= 2)
Version0.11
URL http://ape-package.ird.fr/pegas.html
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("pegas")

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pegas documentation built on July 13, 2018, 1:02 a.m.