Description Usage Arguments Details Value Author(s) See Also Examples

This function compares two haplotype networks and returns either
`TRUE`

or a description of the differences.

1 2 |

`target, current` |
two objects of class |

`use.steps` |
a logical value: whether to consider the number of steps (or length) in each link. |

`...` |
(unused). |

This function should return `TRUE`

if the two networks are
identical even if the links are ordered differently. In all other
situations, a vector of character strings describing the differences
is returned.

As usual with the `all.equal`

function, this cannot
be used directly to return a `TRUE`

/`FALSE`

value (see
examples).

either a logical value (`TRUE`

), or a vector of mode character.

Emmanuel Paradis

1 2 3 4 5 6 7 8 |

```
Loading required package: ape
Loading required package: adegenet
Loading required package: ade4
/// adegenet 2.0.1 is loaded ////////////
> overview: '?adegenet'
> tutorials/doc/questions: 'adegenetWeb()'
> bug reports/feature requests: adegenetIssues()
Attaching package: 'pegas'
The following object is masked from 'package:ade4':
amova
The following object is masked from 'package:ape':
mst
[1] "Number of links different" "Links in target not in target:"
[3] "No1007S--No1208S" "No0913S--No304"
[5] "No1202S--No306" "No0906S--No1202S"
[7] "No0910S--No0913S" "No0913S--No1202S"
[9] "No1007S--No1103S" "No0906S--No306"
[11] "No1103S--No304" "No0912S--No306"
[13] "No0908S--No1103S" "No0908S--No1206S"
[15] "No0910S--No1103S" "No0910S--No1206S"
[17] "No1103S--No1202S" "No1103S--No1208S"
[19] "No1202S--No1206S" "No0908S--No304"
[21] "No0910S--No304" "No1202S--No304"
[23] "No0906S--No0913S" "No0906S--No1103S"
[25] "No0906S--No1206S" "No0908S--No0910S"
[27] "No0908S--No1202S" "No0909S--No0912S"
[29] "No0912S--No1007S" "No0913S--No1103S"
[31] "No1103S--No1206S" "No0906S--No304"
[33] "No1206S--No304" "No0909S--No306"
[35] "No1007S--No306" "No0906S--No0908S"
[37] "No0908S--No0913S" "No305--No306"
[39] "No0912S--No304" "No0908S--No0912S"
[41] "No0910S--No0912S" "No0912S--No1202S"
[43] "No0912S--No1208S" "No0913S--No1206S"
[45] "No1007S--No1202S" "No304--No305"
[47] "No0912S--No305" "No1208S--No306"
[49] "No0906S--No0912S" "No0912S--No0913S"
[51] "No0912S--No1206S" "No0909S--No304"
[53] "No1007S--No304" "No1114S--No306"
[55] "No0908S--No0909S" "No0908S--No1007S"
[57] "No0909S--No0910S" "No0909S--No1202S"
[59] "No0910S--No1007S" "No1103S--No1114S"
[61] "No1202S--No1208S"
[1] FALSE
```

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