phangorn-package: phangorn: Phylogenetic Reconstruction and Analysis

In phangorn: Phylogenetic Reconstruction and Analysis

phangorn: Phylogenetic Reconstruction and Analysis

Description

Allows for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation (Schliep 2011). Offers methods for tree comparison, model selection and visualization of phylogenetic networks as described in Schliep et al. (2017).

Author(s)

Maintainer: Klaus Schliep [e-mail] (ORCID)

Authors:

• Emmanuel Paradis (ORCID)

• Leonardo de Oliveira Martins (ORCID)

• Alastair Potts

• Iris Bardel-Kahr (ORCID)

Other contributors:

• Tim W. White [contributor]

• Cyrill Stachniss [contributor]

• Michelle Kendall [e-mail] [contributor]

• Keren Halabi [contributor]

• Richel Bilderbeek [contributor]

• Kristin Winchell [contributor]

• Liam Revell [contributor]

• Mike Gilchrist [contributor]

• Jeremy Beaulieu [contributor]

• Brian O'Meara [contributor]

• Long Qu [contributor]

• Joseph Brown (ORCID) [contributor]

• Santiago Claramunt (ORCID) [contributor]

See Also

Useful links:

• https://github.com/KlausVigo/phangorn

• https://klausvigo.github.io/phangorn/

• Report bugs at https://github.com/KlausVigo/phangorn/issues

phangorn documentation built on Jan. 23, 2023, 5:37 p.m.