allTrees: Compute all trees topologies.
In phangorn: Phylogenetic Reconstruction and Analysis
View source: R/treeManipulation.R
allTrees R Documentation
Compute all trees topologies.
Description
allTrees computes all bifurcating tree topologies for rooted or
unrooted trees with up to 10 tips. The number of trees grows fast.
Usage
allTrees(n, rooted = FALSE, tip.label = NULL)
Arguments
n
Number of tips (<=10).
rooted
Rooted or unrooted trees (default: rooted).
tip.label
Tip labels.
Value
an object of class multiPhylo.
Author(s)
Klaus Schliep klaus.schliep@gmail.com
See Also
rtree, nni,
howmanytrees, dfactorial
Examples
trees <- allTrees(5)
old.par <- par(no.readonly = TRUE)
par(mfrow = c(3,5))
for(i in 1:15)plot(trees[[i]])
par(old.par)
phangorn documentation built on Sept. 17, 2024, 5:08 p.m.
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View source: R/treeManipulation.R
| allTrees | R Documentation |
Compute all trees topologies.
Description
allTrees computes all bifurcating tree topologies for rooted or
unrooted trees with up to 10 tips. The number of trees grows fast.
Usage
allTrees(n, rooted = FALSE, tip.label = NULL)
Arguments
n |
Number of tips (<=10). |
rooted |
Rooted or unrooted trees (default: rooted). |
tip.label |
Tip labels. |
Value
an object of class multiPhylo.
Author(s)
Klaus Schliep klaus.schliep@gmail.com
See Also
rtree, nni,
howmanytrees, dfactorial
Examples
trees <- allTrees(5)
old.par <- par(no.readonly = TRUE)
par(mfrow = c(3,5))
for(i in 1:15)plot(trees[[i]])
par(old.par)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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