phangorn: Phylogenetic Reconstruction and Analysis

Allows for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation. Offers methods for tree comparison, model selection and visualization of phylogenetic networks as described in Schliep et al. (2017) <doi:10.1111/2041-210X.12760>.

Package details

AuthorKlaus Schliep [aut, cre] (<>), Emmanuel Paradis [aut] (<>), Leonardo de Oliveira Martins [aut] (<>), Alastair Potts [aut], Tim W. White [aut], Cyrill Stachniss [ctb], Michelle Kendall [ctb], Keren Halabi [ctb], Richel Bilderbeek [ctb], Kristin Winchell [ctb], Liam Revell [ctb], Mike Gilchrist [ctb], Jeremy Beaulieu [ctb], Brian O'Meara [ctb], Long Qu [ctb]
Bioconductor views QualityControl Software Technology
MaintainerKlaus Schliep <>
LicenseGPL (>= 2)
Package repositoryView on CRAN
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phangorn documentation built on Dec. 15, 2021, 1:07 a.m.