indActogram: Plot actogram of individual fly

In phase: Analyse Biological Time-Series Data

Plot actogram of individual fly

Description

Allows users to generate individual actograms. The input for this function must be the output of the binData() function. The output of this function is a plotly object.

Usage

indActogram(
  data,
  bin = 30,
  t.cycle = 24,
  ind = 1,
  key.acto = 1,
  color = rgb(0, 0, 0, 1)
)

Arguments

data	Input data file. The input for this function must be the output of the function binData(). See ??binData().
bin	Define the bin size (in minutes) in which input data is saved.
t.cycle	Define the period of the environmental cycle or a single day in hours. This defaults to 24.
ind	The channel number (or individual) whose actogram must be plotted.
key.acto	Key for reactive input tables in the shiny app.
color	Color of actograms in rgb format. The input for this must be a vector with 4 values, i.e., r,g,b,transparency. The values for r,g,b can only be between 0 and 1. 0,0,0 would be black and 1,1,1 would be white. Transparency values can also go from 0 to 1, 0 being fully transparent and 1 being fully opaque.

Value

A plotly htmlwidget with the actogram of a user defined fly.

Examples

## Not run: 
td <- trimData(data = df, start.date = "19 Dec 20", start.time = "21:00",
n.days = 10, bin = 1, t.cycle = 24)
bd <- binData(td)
ind.actogram <- indActogram(data = bd, bin = 30, ind = 2)

## End(Not run)

phase documentation built on April 1, 2023, 12:10 a.m.