sleepStages: Plot sleep stages in individual flies

In phase: Analyse Biological Time-Series Data

Plot sleep stages in individual flies

Description

Allows users to generate individual plots of sleep stages in flies. Sleep stages are defined as follows: 5 to 30-min as short sleep (light blue), 30 to 60-min as intermediate sleep (medium blue) and 60 to 720-min as deep sleep (dark blue). Activity is plotted in red. The input for this function must be the output of the trimData() function. The output of this function is a plot. Note: At this moment, this works accurately only for 24-h days.

Usage

sleepStages(data, n.days, channel = 1, photoperiod = 12)

Arguments

data	Input data file. The input for this function must be the output of the function trimData(). See ??trimData().
n.days	The number of cycles for which sleep stages must be visualized.
channel	The channel number of the fly to be visualized.
photoperiod	This value determines the duration of photo-phase and scoto-phase of the 24-h day. Defaults to 12.

Value

A plot with the day-time and night-time sleep stages of a user defined fly for the number of cycles provided by the user.

Examples

## Not run: 
td <- trimData(data = df, start.date = "19 Dec 20", start.time = "21:00",
n.days = 2, bin = 1, t.cycle = 24)
sleepStages(data = td, n.days = 1)

## End(Not run)

phase documentation built on April 1, 2023, 12:10 a.m.