rosePlotsAct: Generate rose plots for averaged activity data

Description Usage Arguments Value Examples

Description

Users can generate rose plots for the averaged activity data. The input for this function must be output from binData(). The output of this function is a plotly object. By default the averaging of profiles is done over all flies and days.

Usage

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rosePlotsAct(data, bin = 30, t.cycle = 24, rm.channels = c())

Arguments

data

Input data file. The input for this function must be the output of the function binData(). See ??binData().

bin

Intervals in which data are saved (in minutes). This defaults to 30. This value must be the same as that for binData().

t.cycle

Define the period of the environmental cycle or a single day in hours. This defaults to 24. This value must be the same as that for binData().

rm.channels

All the channels that users want to remove from their averaging. This must be a vector, i.e., channels must be separated by commas. For instance, if users choose to remove channels 1 to 5, 25 and 32, then the input should be either c(1,2,3,4,5,25,32) or c(1:5,25,32). This defaults to an empty vector, meaning no individuals are removed from analysis.

Value

A plotly htmlwidget with rose plots for locomotor activity.

Examples

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td <- trimData(data = df, start.date = "19 Dec 20", start.time = "21:00",
n.days = 10, bin = 1, t.cycle = 24)
bd <- binData(td)
r.plot <- rosePlotsAct(data = bd)

phase documentation built on Aug. 17, 2021, 1:06 a.m.

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