Man pages for phenofit
Extract Remote Sensing Vegetation Phenology
| add_HeadTail | Add one year data in the head and tail |
| brks2rfit | get rough fitting |
| CA_NS6 | MOD13A1 EVI observations at flux site CA-NS6 |
| check_GS_HeadTail | Check growing season head and tail minimum values |
| check_input | check_input |
| check_ylu | check_ylu |
| curvefit | Fine curve fitting |
| curvefit0 | curvefit0 |
| curvefits | Fine Curve fitting |
| curvefits_LocalModel | curvefits by local model functions of TIMESAT |
| cutoff | cutoff |
| cv_coef | weighted CV |
| D | D |
| fFIT | S3 class of fine curve fitting object. |
| fFITs | S3 class of multiple fine curve fittings object. |
| f_goal | Goal function of fine curve fitting methods |
| f_goal2 | objective function of double logistics |
| findpeaks | findpeaks |
| find_season.peaks | find_season |
| FitDL | Fine fitting |
| get_fitting | getFittings |
| get_GOF | get_GOF |
| get_param | Get parameters from curve fitting result |
| get_pheno | get_pheno |
| getRealDate | getRealDate |
| GOF | GOF |
| init_lambda | Initial lambda value of Whittaker smoother |
| init_param | init_param |
| input_single | input object with one growing season per year |
| I_optim | Interface of unified optimization functions. |
| kurtosis | skewness and kurtosis |
| lambda_vcurve | lambda_vcurve |
| logistic | Double logistics in Rcpp |
| logistics | Fine fitting functions |
| melt_list | melt_list |
| MOD13A1 | MOD13A1 |
| movmean | movmean |
| opt_FUN | Unified optimization function |
| optim_pheno | optim_pheno |
| PhenoDeriv | Phenology extraction in Derivative method (DER) |
| phenofit | phenofit |
| PhenoGu | Phenology extraction in GU method (GU) |
| PhenoKl | Phenology extraction in Inflection method (Zhang) |
| PhenoTrs | Phenology extraction in Threshold method (TRS) |
| plot_curvefits | plot_curvefits |
| plot_input | Plot INPUT returned by check_input |
| plot_phenofit | plot_phenofit |
| plot_season | plot_season |
| process_phenofit | Extract Vegetation Phenology at site scale |
| process_season | divide_seasons |
| qcFUN | Initial weights according to qc |
| qc_levels | qc level, color and shape |
| qc_sentinel2 | Initial weights for sentinel2 according to SCL band |
| R2_sign | Critical value of determined correlation |
| rcpp_season_filter | season_filter |
| rcpp_wSG | Weighted Savitzky-Golay written in RcppArmadillo |
| reexports | Objects exported from other packages |
| removeClosedExtreme | rm too closed peaks or troughs |
| roughFit | Rough fitting |
| season | Growing season division |
| season_input | Growing season division (unstable version) |
| season_mov | Moving growing season division |
| set_options | set and get phenofit option |
| smooth_wHANTS | Weighted HANTS SMOOTH |
| smooth_wSG | Weighted Savitzky-Golay |
| smooth_wWHIT | Weigthed Whittaker Smoother |
| tidy_MOD13 | tidy_MOD13 |
| tidy_pheno | tidy_pheno |
| v_curve | V-curve theory to optimize Whittaker parameter 'lambda'. |
| wFUN | Weight updating functions |
| whit2 | Weighted Whittaker smoothing with a second order finite... |
