photobiologyPlants: Plant 'Photobiology' Related Functions and Data

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Provides functions for quantifying visible ('VIS') and ultraviolet ('UV') radiation in relation to the 'photoreceptors' 'Phytochromes', 'Cryptochromes', and 'UVR8' which are present in plants. It also includes data sets on the optical properties of plants.

Author
Pedro J. Aphalo [aut, cre]
Date of publication
2016-08-03 23:57:38
Maintainer
Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
License
GPL (>= 3)
Version
0.4.0
URLs

View on CRAN

Man pages

Betula_ermanii.mspct
Spectral data for 'Betula ermanii' leaves
B_G
Calculate B:G photon ratio from spectral irradiance.
CRY2.mspct
CRY2 Absorbance spectra.
McCree_photosynthesis.mspct
McCree's action spectra for whole-leaf photosynthesis.
Pfr_P_ratio
Calculation of Pfr:Ptot ratio from spectral irradiance
Pfr_P_ratio_mono
Calculation of Pfr:Ptot ratio for monochromatic radiation.
Pfr_Ptot
Calculate phytochrome photoequilibrium
Pfr_Ptot_R_FR
Pr:Ptot ratio (photoequilibrium) from R:FR photon ratio.
photobiologyPlants-package
Plant 'Photobiology' Related Functions and Data
Phy_reaction_rates
Phytochrome reaction rates
Phy_Sigma
Phytochrome Sigma as a function of wavelength
Phy_Sigma_FR
Pfr Sigma as a function of wavelength
Phy_Sigma_R
Pr Sigma as a function of wavelength
phytochrome.spct
Tabulated data for Phytochrome Sigma
R_FR
Calculate R:FR photon ratio from spectral irradiance.
Solidago_altissima.mspct
Spectral optical data for 'Solidago altissima' leaves
UVA_PAR
Calculate UVA:PAR photon ratio from spectral irradiance.
UVA_UV
Calculate UVA:UV photon ratio from spectral irradiance.
UVB_PAR
Calculate UVB:PAR photon ratio from spectral irradiance.
UVB_UV
Calculate UVB:UV photon ratio from spectral irradiance.
UV_PAR
Calculate UV:PAR photon ratio from spectral irradiance.
UVR8_Glasgow.spct
UVR8 absorbance spectrum

Files in this package

photobiologyPlants
photobiologyPlants/inst
photobiologyPlants/inst/staticdocs
photobiologyPlants/inst/staticdocs/index.r
photobiologyPlants/inst/doc
photobiologyPlants/inst/doc/dataplotsPlants.R
photobiologyPlants/inst/doc/userguideplants.Rnw
photobiologyPlants/inst/doc/dataplotsPlants.pdf
photobiologyPlants/inst/doc/userguideplants.R
photobiologyPlants/inst/doc/dataplotsPlants.Rnw
photobiologyPlants/inst/doc/userguideplants.pdf
photobiologyPlants/NAMESPACE
photobiologyPlants/NEWS
photobiologyPlants/data
photobiologyPlants/data/leaves.spct.rda
photobiologyPlants/data/phytochrome.spct.rda
photobiologyPlants/data/UVR8.spct.rda
photobiologyPlants/data/McCree.rda
photobiologyPlants/data/cry.spct.rda
photobiologyPlants/R
photobiologyPlants/R/Pfr-P-ratio.R
photobiologyPlants/R/Pfr-Ptot.R
photobiologyPlants/R/phytochrome-data.r
photobiologyPlants/R/phy-reaction-rates.R
photobiologyPlants/R/uvr8-Glasgow-spct.r
photobiologyPlants/R/Phy-Sigma-FR.R
photobiologyPlants/R/Phy-Sigma.R
photobiologyPlants/R/McCree-photosynthesis-mspct.R
photobiologyPlants/R/Phy-Sigma-R.R
photobiologyPlants/R/cry2-mspct.r
photobiologyPlants/R/Pfr-P-ratio-mono.R
photobiologyPlants/R/plant-optics-data.r
photobiologyPlants/R/plant-qq-ratios.r
photobiologyPlants/R/photobiologyPlants.r
photobiologyPlants/R/PfrPtot-RFR.R
photobiologyPlants/vignettes
photobiologyPlants/vignettes/userguideplants.Rnw
photobiologyPlants/vignettes/userguideplants-concordance.tex
photobiologyPlants/vignettes/dataplotsPlants.Rnw
photobiologyPlants/vignettes/dataplotsPlants-concordance.tex
photobiologyPlants/README.md
photobiologyPlants/MD5
photobiologyPlants/build
photobiologyPlants/build/vignette.rds
photobiologyPlants/DESCRIPTION
photobiologyPlants/man
photobiologyPlants/man/McCree_photosynthesis.mspct.Rd
photobiologyPlants/man/UVA_UV.Rd
photobiologyPlants/man/Phy_reaction_rates.Rd
photobiologyPlants/man/UVB_PAR.Rd
photobiologyPlants/man/UVR8_Glasgow.spct.Rd
photobiologyPlants/man/Solidago_altissima.mspct.Rd
photobiologyPlants/man/phytochrome.spct.Rd
photobiologyPlants/man/photobiologyPlants-package.Rd
photobiologyPlants/man/Pfr_P_ratio_mono.Rd
photobiologyPlants/man/Betula_ermanii.mspct.Rd
photobiologyPlants/man/Phy_Sigma.Rd
photobiologyPlants/man/Phy_Sigma_FR.Rd
photobiologyPlants/man/Pfr_P_ratio.Rd
photobiologyPlants/man/R_FR.Rd
photobiologyPlants/man/UVB_UV.Rd
photobiologyPlants/man/Pfr_Ptot.Rd
photobiologyPlants/man/UVA_PAR.Rd
photobiologyPlants/man/B_G.Rd
photobiologyPlants/man/UV_PAR.Rd
photobiologyPlants/man/CRY2.mspct.Rd
photobiologyPlants/man/Pfr_Ptot_R_FR.Rd
photobiologyPlants/man/Phy_Sigma_R.Rd