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#' Sackin index
#'
#' Finds the Sackin index for a tree.
#' Note that the package \code{apTreeshape} has a function \code{sackin} to compute the Sackin index with additional options to normalise it based on the model;
#' we include this simple function here for convenience within this package, and for use on objects of class \code{phylo} and \code{phylo4}.
#'
#' @author Michael Boyd \email{mboyd855@gmail.com}
#' @author Michelle Kendall \email{michelle.louise.kendall@@gmail.com}
#'
#' @param tree a tree of class \code{phylo} or \code{phylo4}. The tree should be binary and rooted; if not it will be coerced into a binary rooted tree using multi2di, if possible.
#' @param normalise option to normalise the result, default is \code{FALSE}.
#'
#' @return The Sackin index of the tree.
#'
#' @import ape
#'
#' @examples
#' ## Sackin index of a random tree with 10 tips:
#' sackin.phylo(rtree(10))
#'
#' ## normalised Sackin index:
#' sackin.phylo(rtree(10), normalise=TRUE)
#'
#'
#' @export
sackin.phylo <- function(tree,normalise=FALSE) {
depths <- getDepths(tree)
tipDepths <- depths$tipDepths
if (normalise==FALSE){
return(sum(tipDepths))
}
else {
n <- length(tree$tip.label)
return((sum(tipDepths))/((1/2)*(n*(n+1)) - 1))
}
}
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